View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8734_high_4 (Length: 327)
Name: NF8734_high_4
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 45274375 - 45274060
Alignment:
| Q |
1 |
ctctcaaaatttatttttgaagaaaacataactcacattgaaaagagaaatatatacatataacattgacatatatagccagtgtgattgaaattactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45274375 |
ctctcaaaatttatttttgaagaaaacataactcgcattgaaaagagaaatatatacatataacattgacatatatagccagtgtgatcgaaattactaa |
45274276 |
T |
|
| Q |
101 |
ttaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45274275 |
ttaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgt |
45274176 |
T |
|
| Q |
201 |
ggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45274175 |
ggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgc |
45274076 |
T |
|
| Q |
301 |
aattgtcttgtctctg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45274075 |
aattgtcttgtctctg |
45274060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 45282618 - 45282305
Alignment:
| Q |
1 |
ctctcaaaatttatttttgaagaaaacataactcacattgaaaagagaaatatatacatataacattgacatatatagccagtgtgattgaaattactaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||| | | ||| |||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
45282618 |
ctctcaaaattcatttttgaagaaaacataactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgatcgaaattactaa |
45282519 |
T |
|
| Q |
101 |
ttaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45282518 |
ttaattgattatccatgaatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgt |
45282419 |
T |
|
| Q |
201 |
ggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgc |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282418 |
ggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgc |
45282319 |
T |
|
| Q |
301 |
aattgtcttgtctc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45282318 |
aattgtcttgtctc |
45282305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 45293904 - 45293643
Alignment:
| Q |
58 |
atataacattgacatatata---gccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaagg |
154 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
45293904 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45293805 |
T |
|
| Q |
155 |
caatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293804 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45293705 |
T |
|
| Q |
255 |
ttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctctg |
316 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| || | ||||||||||||| || |||||| |
|
|
| T |
45293704 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctg |
45293643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 58 - 316
Target Start/End: Complemental strand, 45302864 - 45302603
Alignment:
| Q |
58 |
atataacattgacatatata---gccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaagg |
154 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
45302864 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45302765 |
T |
|
| Q |
155 |
caatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302764 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45302665 |
T |
|
| Q |
255 |
ttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctctg |
316 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| || | ||||||||||||| || |||||| |
|
|
| T |
45302664 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctg |
45302603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 45270846 - 45270547
Alignment:
| Q |
1 |
ctctcaaaatttatttttgaagaaaacat-aactcacattgaaaagagaaatatatacatataacattgacatatatagccagtgtgattgaaattacta |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||||||||| | ||||||| | | ||| | |||||||||| |||| || ||| |||||| |
|
|
| T |
45270846 |
ctctcaaaattcatttttgaaaaaaacattaactcacattgaaaagatatatatatagaca---catacatatatatagccggtgttatagaagttacta |
45270750 |
T |
|
| Q |
100 |
attaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccg |
199 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
45270749 |
attaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgccggtatgcaagctg |
45270650 |
T |
|
| Q |
200 |
tggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccg |
299 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||| |||||| || | |||||| |
|
|
| T |
45270649 |
tggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccg |
45270550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45294003 - 45293958
Alignment:
| Q |
1 |
ctctcaaaatttatttttgaagaaaacataactcacattgaaaaga |
46 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45294003 |
ctctcaaaattcatttttgaagaaaacataactcacattgaaaaga |
45293958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45302963 - 45302918
Alignment:
| Q |
1 |
ctctcaaaatttatttttgaagaaaacataactcacattgaaaaga |
46 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45302963 |
ctctcaaaattcatttttgaagaaaacataactcacattgaaaaga |
45302918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University