View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_high_6 (Length: 241)
Name: NF8734_high_6
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45274449 - 45274671
Alignment:
| Q |
1 |
tttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274449 |
tttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcag |
45274548 |
T |
|
| Q |
101 |
ggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274549 |
ggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtt |
45274648 |
T |
|
| Q |
201 |
tcccttaggataagaggcaagag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45274649 |
tcccttaggataagaggcaagag |
45274671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45282690 - 45282912
Alignment:
| Q |
1 |
tttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcag |
100 |
Q |
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|||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
45282690 |
tttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatggtccttgcag |
45282789 |
T |
|
| Q |
101 |
ggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtt |
200 |
Q |
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| T |
45282790 |
ggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtt |
45282889 |
T |
|
| Q |
201 |
tcccttaggataagaggcaagag |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
45282890 |
tcccttagggtaagaggcaagag |
45282912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 45294080 - 45294297
Alignment:
| Q |
3 |
tgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcaggg |
102 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||| || | ||| |
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| T |
45294080 |
tgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaacaatggtctttccgggg |
45294179 |
T |
|
| Q |
103 |
ccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttc |
202 |
Q |
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| T |
45294180 |
ccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctgcctttgttcc |
45294279 |
T |
|
| Q |
203 |
ccttaggataagaggcaa |
220 |
Q |
| |
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||||||| |||| ||||| |
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| T |
45294280 |
ccttagggtaagcggcaa |
45294297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 45303040 - 45303257
Alignment:
| Q |
3 |
tgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcaggg |
102 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||| || | ||| |
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| T |
45303040 |
tgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaacaatggtctttccgggg |
45303139 |
T |
|
| Q |
103 |
ccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttc |
202 |
Q |
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||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| | |
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| T |
45303140 |
ccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctgcctttgttcc |
45303239 |
T |
|
| Q |
203 |
ccttaggataagaggcaa |
220 |
Q |
| |
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||||||| |||| ||||| |
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| T |
45303240 |
ccttagggtaagcggcaa |
45303257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 45270984 - 45271138
Alignment:
| Q |
69 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacacca |
168 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45270984 |
gttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccg |
45271083 |
T |
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| Q |
169 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagag |
223 |
Q |
| |
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|||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||| |
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| T |
45271084 |
gccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagag |
45271138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 38588222 - 38588302
Alignment:
| Q |
136 |
ttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataagag |
216 |
Q |
| |
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||||||| |||||||| ||||||||||| |||||||| || ||||||| || ||||||||| |||||||||||||||| |
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| T |
38588222 |
ttgggaatggtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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