View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_2 (Length: 401)
Name: NF8734_low_2
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 45924994 - 45924619
Alignment:
| Q |
1 |
actattctaaatttctcatcatccatggcagaacaacctaccctcaccaacctcccacccacagtggtgagactttttcatgttagagtttaatcaaact |
100 |
Q |
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| T |
45924994 |
actattctaaatttctcatcatccatggcagaacaacctaccctcaccaacctcccacccacagtggtgagattttttcatgttagagtttaatcaaact |
45924895 |
T |
|
| Q |
101 |
tctcaaattaatcaaactttatgcagtataccaatttatacttattgaagattgataatagtagaagaggaagtgctttaattatcaagcttaccacacc |
200 |
Q |
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| T |
45924894 |
tctcaaattaatcaaactttatgcagtataccaatttatacttattgaagattgataatagtagaagaggaagtgctttaattatcaagcttaccacacc |
45924795 |
T |
|
| Q |
201 |
aaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaattacaaattctcnnnnnnnnnnnnnnnttaa |
300 |
Q |
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| T |
45924794 |
aaccaaatcacgagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaattacaaattctc-aaaaaaaagaaaaattaa |
45924696 |
T |
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| Q |
301 |
aatacagatcaaaccattaattttctttttcttttatcctattgtacctttagaaaacttgtatacaatcactcacc |
377 |
Q |
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| T |
45924695 |
aatacagatcaaaccattaattttctttttcttttatcctattgtacctttagaaaacttgtatacaatcactcacc |
45924619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 76 - 377
Target Start/End: Complemental strand, 45936878 - 45936574
Alignment:
| Q |
76 |
tttcatgttagagtttaatcaaacttctcaaattaat---caaacttt-atgcagtataccaatttatacttattgaagattgataatagtagaagagga |
171 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45936878 |
tttcatgttagagtttaatcaaacttctcaaattaataatcaaacttttatgcagtataccaatttacacttattgaagattgataatagtagaagagga |
45936779 |
T |
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| Q |
172 |
agtgctttaattatcaagcttaccacaccaaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaatt |
271 |
Q |
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| T |
45936778 |
cgaactttaattatcaagcttaccacaccaaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaatt |
45936679 |
T |
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| Q |
272 |
acaaattctcnnnnnnnnnnnnnnnttaaaatacagatcaaaccattaattttctttttcttttatcctattgtacctttagaaaacttgtatacaatca |
371 |
Q |
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| T |
45936678 |
acaaattctc-aaaaaaaagaaaaattaaaatacagatcaaaccattaattttctttttcttttatcctattgtacctttagaaaacttgtatacaatca |
45936580 |
T |
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| Q |
372 |
ctcacc |
377 |
Q |
| |
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|||||| |
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| T |
45936579 |
ctcacc |
45936574 |
T |
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