View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_3 (Length: 397)
Name: NF8734_low_3
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 44425449 - 44425660
Alignment:
| Q |
181 |
gtattacaccataaatattatttatcacttatttttaaaaatagaaagaatggcattaatatcggacatattatgagtaaaattattactaaaatggaaa |
280 |
Q |
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| T |
44425449 |
gtattacaccataaatattatttattacttatttttaaaaatagaaagaatggcattaatatcggacatattatgagtaaaattattactaaaatggaaa |
44425548 |
T |
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| Q |
281 |
agact--cgcatgaaggaatgctgactataaatatcaaaggtgggtcccac------nnnnnnnnnncaccagaattctcctaaactgccggcaccatcc |
372 |
Q |
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| T |
44425549 |
agactcccgcatgaaggaatggtgactataaatatcaaa-gtgggtcccacaaaaaaaaaaaaaaaacaccagaattctcctaaactgccggcaccatcc |
44425647 |
T |
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| Q |
373 |
cgtctttacttca |
385 |
Q |
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||||||||||||| |
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| T |
44425648 |
cgtctttacttca |
44425660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 44425283 - 44425385
Alignment:
| Q |
15 |
cagtttgtttcttctcaggatttcgtgttgtaatgcttcatggtatttagcaaaactcaaatataacacctaaactatgtagtttattgaaattattctt |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44425283 |
cagtttatttcttctcaggatttcgtgttgtaatgcttcatggtatttagcaaaactcaaatataacacctaaactatgtagtttattgaaattattctt |
44425382 |
T |
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| Q |
115 |
tgt |
117 |
Q |
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||| |
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| T |
44425383 |
tgt |
44425385 |
T |
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