View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_4 (Length: 366)
Name: NF8734_low_4
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 40483204 - 40483552
Alignment:
| Q |
1 |
aagcttcaatgaaatcatggtgtcaccgtgatttgacaaaattcactatcaatccaaacatgcacttagctcctgaaattgagttgtgtaacaaattaac |
100 |
Q |
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| T |
40483204 |
aagcttcaatgaaatcatggtgtcaccgtgatttgacaaaattcactatcaatccaaacatgcacttagctcctgaaattgagttgtgtaacaaactaac |
40483303 |
T |
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| Q |
101 |
aattgcatatgttgcaggtgtgtgctttgccgcaaaagagctgattatcttgtatccaagaaggtaatgttttctgctcttcttatactgtcttctgaaa |
200 |
Q |
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| T |
40483304 |
aattgcatatgttgcaggtgtgtgctttgccgcaaaagagctgattatcttgcatccaagaaggtattgttttctgctcttcttatactgtcttctgaaa |
40483403 |
T |
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| Q |
201 |
tttcatttgattcttgctagcttcaacctcatattaagattgctgtttttcttggaaaaacatttgaacgttgctttcagtacttaaagtcttcttagga |
300 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483404 |
tttcatttgattcttgctagcttctaactcatattaagattgctgtttttcttggaaaaacatttgaacgttgctttcagtacttaaagtcttcttagga |
40483503 |
T |
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| Q |
301 |
gacgattttggttctggaattctggttgttaagagtttatagtatcaac |
349 |
Q |
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| T |
40483504 |
gacgattttgattctggaattctgcttgttaagagtttatagtatcaac |
40483552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 22533728 - 22533761
Alignment:
| Q |
8 |
aatgaaatcatggtgtcaccgtgatttgacaaaa |
41 |
Q |
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| T |
22533728 |
aatgaaatcatggtctcaccgtgatttgacaaaa |
22533761 |
T |
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