View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_6 (Length: 308)
Name: NF8734_low_6
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 12074027 - 12073751
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataa |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12074027 |
acataagcattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaatagtggtatataa |
12073928 |
T |
|
| Q |
119 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgcttttaattgtgccttcttcaaccacttgtttggct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12073927 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgcttttaattgtgccttcttcaaccacttgtttggc- |
12073829 |
T |
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| Q |
219 |
ttgcttttctgtaaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatcctactagaataatct |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
12073828 |
-----tttctgtaaacatttactaaacatttttttctttactaaacatgaaattagaaaagtacaatcctactggaaaaatct |
12073751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 12046820 - 12046556
Alignment:
| Q |
27 |
attcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaaagttggc |
126 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||| ||||||||||||||||| ||| |||||||||||||| | |
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| T |
12046820 |
attcttaaattgatatttagaaatctcataatttaactgaaacagggttgaggaaaaaagtggcaaagaccataaagaatagtagtatataaaagttgac |
12046721 |
T |
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| Q |
127 |
tcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgcttttaattgtgccttcttcaaccacttgtttggctttgctttt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12046720 |
tcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttttgcttttaattgtgccttcttcaaccacttgtttggctttgctttt |
12046621 |
T |
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| Q |
227 |
ctgtaaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatcctact |
291 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
12046620 |
ctgtaaacatttactaaacatttttttctttactaaacatgaaattagaaaattacaatcctact |
12046556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 12051070 - 12050906
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataa |
118 |
Q |
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||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||||| || ||| ||||||||||||| ||| |||||||| |
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| T |
12051070 |
acataagcattcttaaaatgatatttagaaatatcataattgaactgcaacaaagttgaggaaaaacgtggcagagaccataaagaatagtagtatataa |
12050971 |
T |
|
| Q |
119 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgc |
183 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12050970 |
aagttggctcattttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgc |
12050906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 12053597 - 12053434
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataa |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||| || ||| |||||||| ||| |||||| |
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| T |
12053597 |
acataagcattcttaaattgatatttagaaatctcataattaaactgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtaccatataa |
12053499 |
T |
|
| Q |
119 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgc |
183 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12053498 |
aagttgactcaatttttaactgtgtgagattgtttactttttcaatatgatttcataccttctgc |
12053434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 12066526 - 12066363
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataa |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | |||||||||||| |||| || |||||||| |
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| T |
12066526 |
acataagcattcttaaattgatatttagaaatatcataattgaattgaaacaaagttgaggaaaaaaatggcaaagaccatatagaatcgtagtatataa |
12066427 |
T |
|
| Q |
119 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgc |
183 |
Q |
| |
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|||||| |||||||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||||||| |
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| T |
12066426 |
aagttgactcaatttttaactctgttagattattcac-ttttcaatacgatttcaaaccttctgc |
12066363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 12058381 - 12058111
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataa |
118 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |||||||||||||||||| | |||||| | | ||||||||||||| | |||||||||| |
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| T |
12058381 |
acataagcattcataaattgatatttagaaatatcataattgaactgaaacaca---------aaaagtggtagagaccataaagaatattggtatataa |
12058291 |
T |
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| Q |
119 |
aagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctgctttta------att--gtgccttcttcaaccactt |
210 |
Q |
| |
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|||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||| || | ||| | |||||||||||||||| |
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| T |
12058290 |
aagttggctcaattttga-ctgtatgggattgttcactttttcaatatgatttcataccttctgccttcaagcagcattacataccttcttcaaccactt |
12058192 |
T |
|
| Q |
211 |
gtttggctttgcttttctgt-aaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatcctact |
291 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||| ||||||| |||||||||| |||||| || ||||||||| |
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|
| T |
12058191 |
gtttggctttgcttttctatgaaacattgactaaacatttttttctttactcaacatgaaataagaaaa-tacaatcctact |
12058111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 12063942 - 12063790
Alignment:
| Q |
20 |
cataagtattcttaaattgatatttagaaataccataattgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatataaa |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| || ||| ||||||||| ||||||||||||| |
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| T |
12063942 |
cataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagaaaaaaagtggcggagatcataaagaatagtggtatataaa |
12063843 |
T |
|
| Q |
120 |
agttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcat |
174 |
Q |
| |
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|||||||||||| |||||| | ||||||||||| |||||||||||| ||||||| |
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| T |
12063842 |
agttggctcaatatttaac--tatgagattgttcgctttttcaatataatttcat |
12063790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 12050855 - 12050755
Alignment:
| Q |
191 |
tgtgccttcttcaaccacttgtttggctttgcttttctgt-aaacatttactaaacannnnnnnctttactaaacatgaaattagaaaagtataatccta |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||| ||||| || ||||||| |
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|
| T |
12050855 |
tgtgccttctccaaccacttgtttggctttgcttttctgtaaaacattcactaaacattttttcctttacggaacatgaaattggaaaattacaatccta |
12050756 |
T |
|
| Q |
290 |
c |
290 |
Q |
| |
|
| |
|
|
| T |
12050755 |
c |
12050755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 30353562 - 30353724
Alignment:
| Q |
19 |
acataagtattcttaaattgatatttagaaataccataa-ttgaactgaaacaaagttgaagaaaaaagttgcaaagaccataaagaacagtggtatata |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | || ||||||||||||| ||||| || | |||| ||| ||||||||||||| |||| |||||| |
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|
| T |
30353562 |
acataagaattcttaaattgatatttagaaatctaaaaaattgaactgaaacagggttgaggagacaagtggcagagaccataaagaatagtgatatata |
30353661 |
T |
|
| Q |
118 |
aaagttggctcaatttttaactgtgtgagattgttcactttttcaatatgatttcataccttctg |
182 |
Q |
| |
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|| |||||||||||||||||| | || |||||||||| |||||||||| ||||||||||||||| |
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| T |
30353662 |
aaggttggctcaatttttaac--tatgggattgttcaccttttcaatataatttcataccttctg |
30353724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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