View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_7 (Length: 303)
Name: NF8734_low_7
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 3593774 - 3593908
Alignment:
| Q |
114 |
tctatcaaataccgaaccatgcatcctttgcttaacttttcatctttatttcnnnnnnnaatgaaatgaagacatatagcaccggtggtgttcaatataa |
213 |
Q |
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| T |
3593774 |
tctatcaaataccgaaccatgcatcctttgcttaactttccatctttatttctttttttaatgaaatgaagacatatagcaccggtggtgttcaatgtaa |
3593873 |
T |
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| Q |
214 |
caaacacaactgagagcattttgattagaattggg |
248 |
Q |
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| T |
3593874 |
caaacacaactgagagcattttgattagaattggg |
3593908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 3593594 - 3593694
Alignment:
| Q |
17 |
aaatctgcgtctttgagacgtggagcagcccaaccatcctttcctgcatgaatcaaataaccagagaacttaggttaaacacgtacttgaattcttgtct |
116 |
Q |
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| T |
3593594 |
aaatctgcgtctttgagacgtggagcggcccaaccatcctttcctgcatgaatcaaataaccagagaacttaggttaaacacgtacttgaattcttgtct |
3593693 |
T |
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| Q |
117 |
a |
117 |
Q |
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| |
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| T |
3593694 |
a |
3593694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 3588934 - 3589034
Alignment:
| Q |
17 |
aaatctgcgtctttgagacgtggagcagcccaaccatcctttcctgcatgaatcaaataaccagagaacttaggttaaacacgtacttgaattcttgtct |
116 |
Q |
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| T |
3588934 |
aaatctgcgtctttgagacgtggagcggcccaaccatcttttcctgcatgaatcaaataaccagagaacttaggttaaacacgtacttgaattcttgtct |
3589033 |
T |
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| Q |
117 |
a |
117 |
Q |
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| T |
3589034 |
a |
3589034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 3589103 - 3589191
Alignment:
| Q |
206 |
caatataacaaacacaactgagagcattttgattagaattgggtcaaatcaattattttattatatatggtttcattactaagaataat |
294 |
Q |
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| T |
3589103 |
caatataagaaacacaactgagagcattttgattagaattgggtcaaatcaattattttattatatatggtttcattactaagaataat |
3589191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28933132 - 28933220
Alignment:
| Q |
17 |
aaatctgcgtctttgagacgtggagcagcccaaccatcctttcctgcatgaatcaaataaccagagaacttaggttaaacacgtacttg |
105 |
Q |
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| T |
28933132 |
aaatctgcgtctttgagacgtggagcggcacaaccatcctttcctgcatgactcaaataaccagagaactttagttaaactcctacttg |
28933220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 35715675 - 35715586
Alignment:
| Q |
17 |
aaatctgcgtctttgagacgtggagcagcccaaccatcctttcctgcatgaatc-aaataaccagagaacttaggttaaacacgtacttg |
105 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||| | | ||||||||||||||||| |||||| || |||||| |
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| T |
35715675 |
aaatctgcgtctttgagacgtggagcggcccagccatcctttcctgcatgcaccaaaataaccagagaacttcagttaaaaacctacttg |
35715586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 8826595 - 8826632
Alignment:
| Q |
257 |
attattttattatatatggtttcattactaagaataat |
294 |
Q |
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| T |
8826595 |
attattttagtatatatggtttcattactaagaataat |
8826632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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