View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8734_low_8 (Length: 291)
Name: NF8734_low_8
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 44089086 - 44088910
Alignment:
| Q |
20 |
ctatcttcactgaaaaatcttttgattctccattctttatctttttgttctacctcagagccattttgtactttagtagtcttcttcatccaatcaaaag |
119 |
Q |
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| T |
44089086 |
ctatcttcactgaaaaatcttttgattctccattctttatctttttgttctacctcagagccattttgtactttagtagtcttcttcatccaatcaaaag |
44088987 |
T |
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| Q |
120 |
aaattggaaagaacatcttcaataggaaggtttcactgtccatgctttcaactcttaacattttaccatgtctattg |
196 |
Q |
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| T |
44088986 |
aaattggaaagaacatcttcaataggaaggtttcactgtccatgctttcaactcttaacattttaccatgtctattg |
44088910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 44088860 - 44088825
Alignment:
| Q |
246 |
gttgaggttgttgaaatttactatacacaggttctg |
281 |
Q |
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| T |
44088860 |
gttgaggttgttgaaatttactatacactggttctg |
44088825 |
T |
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