View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8734_low_9 (Length: 283)
Name: NF8734_low_9
Description: NF8734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8734_low_9 |
 | |
|
| [»] scaffold1808 (1 HSPs) |
| | |
|
| [»] scaffold0674 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 35130881 - 35131132
Alignment:
| Q |
18 |
tttggtggtggcattctcaacatatcccaggaaatatctctctcaatcaatcgctttctgccatatggacacctataaaattgatatcatttgaaataca |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35130881 |
tttggcggtggcattctcaacatatcccaggaaatatctctctcaatcaatcgctttctgccatatggacacctataaaattgatataatttgaaataca |
35130980 |
T |
|
| Q |
118 |
attagtcaattacaacaaaagtatatcgtgtcatgttgatcaaatttatgtttcatattaaatctccagcaagaaaaattaaggagtgaattttaccttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
35130981 |
attagtcaattacaacaaaagtatatcgtgtcatgttgatcaaatttatgtttcatattaaatctacaacaagaaaaattaaggagtgaattttaccttg |
35131080 |
T |
|
| Q |
218 |
tttgaaaggtgtctgttctagaatcataactaacaatggcatcataacagtg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35131081 |
tttgaaaggtgtctgttctagaatcataactaacaatggcatcataacagtg |
35131132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 35138160 - 35138338
Alignment:
| Q |
18 |
tttggtggtggcattctcaacatatcccaggaaatatctctctcaatcaatcgctttctgccatatggacacctataaaattgatatcatttgaaataca |
117 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
35138160 |
tttggtggtggcatcctcaacatattccagggaatatctctctcaatcactcgccttctgccatgtggagtcctataaaattgatagcatttgaaata-- |
35138257 |
T |
|
| Q |
118 |
attagtcaattacaacaaaag----tatatcgtgtcatgttgatcaaatttatgtttcatattaaatctccagcaagaaaaattaag |
200 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
35138258 |
------caattacaacaaaagtatatatattgtggcatgttgattaaatttatgtttcatattaaatccacaacaagaaaaattaag |
35138338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 35138371 - 35138439
Alignment:
| Q |
200 |
ggagtgaattttaccttgtttgaaaggtgtctgttctagaatcataactaacaatggcatcataacagt |
268 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
35138371 |
ggagtgaattgtacctcgtttgaaaggtgtttgttttagaatcataagtaacaatggcatcataacagt |
35138439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 14257953 - 14258019
Alignment:
| Q |
202 |
agtgaattttaccttgtttgaaaggtgtctgttctagaatcataactaacaatggcatcataacagt |
268 |
Q |
| |
|
|||||||| |||| || | |||||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
14257953 |
agtgaattgtaccctgctcgaaaggtgtctgttttataatcattactaacaatggcatcataacagt |
14258019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 308 - 269
Alignment:
| Q |
18 |
tttggtggtggcattctcaacatatcccaggaaatatctc |
57 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
308 |
tttggaggtggcattctcaacatatcccagggaatatctc |
269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0674 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0674
Description:
Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 3451 - 3490
Alignment:
| Q |
18 |
tttggtggtggcattctcaacatatcccaggaaatatctc |
57 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3451 |
tttggaggtggcattctcaacatatcccagggaatatctc |
3490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University