View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8735_high_1 (Length: 429)
Name: NF8735_high_1
Description: NF8735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8735_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 24884209 - 24883811
Alignment:
| Q |
19 |
ggttttgcaattacatgaaaacatgaagtattatgagaatatcctgagagactcatccctggtttaattgaaaaagaggcactgaccaaagaaaacaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884209 |
ggttttgcaattacatgaaaacatgaagtattatcagaatatcctgagagactcatccctggtttaattgaaaaagaggcactgaccaaagaaaacaaaa |
24884110 |
T |
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| Q |
119 |
aggggaaaggaaatcacctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaaaaccaaaaggttatcagtattaaaagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884109 |
aggggaaaggaaatcacctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaaaaccaaaaggttatcagtattaaaagc |
24884010 |
T |
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| Q |
219 |
attggatattatgagagattagaggatttttagtatgtcatccttgccttgatttactgctataacttctgagtttcttagcagttcctttgtgatgtca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24884009 |
attggatattatgagagattagaggatttttagtctgtcatccttgccttgatttactgctataacttctgagtttcttagcagttcctttgtgatgtca |
24883910 |
T |
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| Q |
319 |
tccagtgctcgaatgtcacaaccgatcaataaaggggcctatatatatacaaaacaatt-ttttcttagaggatatgatattattgtgaatagaataat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
24883909 |
tccagtgctcgaatgtcacaaccgatcaataaaggggcctatatatatacaaaacaatttttttcttagaggatatgatattattgtgaatagagtaat |
24883811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 34593372 - 34593429
Alignment:
| Q |
134 |
acctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaa |
191 |
Q |
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||||||||||||| | |||||||||| ||||| ||||||| ||||| ||||||||||| |
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| T |
34593372 |
acctccaaatcattagtacttttcactttctttccttgaactcctagtttgtctgcaa |
34593429 |
T |
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