View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8735_high_2 (Length: 337)
Name: NF8735_high_2
Description: NF8735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8735_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 15527515 - 15527657
Alignment:
| Q |
117 |
agtattattcttacgctttagctaaatagcataacaactatacctggaaatgcgtaaagatgactttaattttctcctacacttgcctgcacaaatatca |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15527515 |
agtattattcttaccctttagctaaatagcataaacactatacctggatatacgtaaagatgactttaactttctcctacacttgcctgcacaaatatca |
15527614 |
T |
|
| Q |
217 |
accaataatatgttaagtactatatgtagttttgacttctgag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15527615 |
accaataatatgttaagtactatatgtagttttgacttctgag |
15527657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 15527371 - 15527470
Alignment:
| Q |
16 |
atttataataacattctttttgtttattaaaaaagaaactaaaatgagataagcaattctttttctactttcagaacttggagttgaattcgaacacttc |
115 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15527371 |
atttatactaaaattctttttgtctattaaaaaagaaactaaaatgagaaaagtaattctttttctactttcagaacttggagttgaattcgaacacttc |
15527470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 15538333 - 15538446
Alignment:
| Q |
141 |
aatagcataacaactatacctggaaatgcgtaaagatgactttaattttctcctacacttgcctgcacaaatatcaaccaataatatgttaagtactata |
240 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15538333 |
aatagcaaaacaactatacctggaaatgcgtaaagatgactttaattttttcttacagttgcctgcacaaatatcgacaaataatatgttaagta----- |
15538427 |
T |
|
| Q |
241 |
tgtagttttgacttctgag |
259 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
15538428 |
tgtcgttttgacttctgag |
15538446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University