View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8735_low_6 (Length: 245)
Name: NF8735_low_6
Description: NF8735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8735_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 52001773 - 52001546
Alignment:
| Q |
1 |
aaaaagatgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaa |
100 |
Q |
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| T |
52001773 |
aaaaagatgatgatgtggaacatgaagttgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaa |
52001677 |
T |
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| Q |
101 |
caaaagggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatg |
200 |
Q |
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| T |
52001676 |
caaaagggggtttgtcgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatg |
52001577 |
T |
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| Q |
201 |
tctcttaaaattcttgccaatcatgttgatg |
231 |
Q |
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| T |
52001576 |
tctcttaaaattcttgccaatcatgttgatg |
52001546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 52011639 - 52011411
Alignment:
| Q |
6 |
gatgatgatgtggaacatgaaattgatgatgatgat---tctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaaca |
102 |
Q |
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| T |
52011639 |
gatgatgatgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaaga |
52011540 |
T |
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| Q |
103 |
aaagggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtc |
202 |
Q |
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| T |
52011539 |
aaaaaggggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtc |
52011440 |
T |
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| Q |
203 |
tcttaaaattcttgccaatcatgttgatg |
231 |
Q |
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| T |
52011439 |
tcttaaaattcttgctaaccatgctgatg |
52011411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 51987866 - 51988087
Alignment:
| Q |
7 |
atgatgatgtggaacatgaaattgatgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaag |
106 |
Q |
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| T |
51987866 |
atgatgatatggaacatgaaactgatgatggt---tctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaa |
51987962 |
T |
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| Q |
107 |
ggggtttgttgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctctt |
206 |
Q |
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| T |
51987963 |
agggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgcctt |
51988062 |
T |
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| Q |
207 |
aaaattcttgccaatcatgttgatg |
231 |
Q |
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| T |
51988063 |
aacattcttgcgaaccatgctgatg |
51988087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 11749419 - 11749220
Alignment:
| Q |
32 |
tgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggggtttgttgatgaatcccttact |
131 |
Q |
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|||||||| |||||||||||||||||| || || ||||||||||||||||||||||| | |||| ||| |||| ||||||||||||||||||||||| | |
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| T |
11749419 |
tgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttatt |
11749320 |
T |
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| Q |
132 |
tgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatg |
231 |
Q |
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| T |
11749319 |
tgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgtcttttaaagcccttgctaatcatgttgatg |
11749220 |
T |
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