View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8736_low_1 (Length: 516)
Name: NF8736_low_1
Description: NF8736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8736_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 29146783 - 29146481
Alignment:
| Q |
19 |
ccacaatagtaaaaattgaagtccatagttcaacttgaa-cataatactatcaataattttgtaataattctttaatcaccttatatttcctacccaatg |
117 |
Q |
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| T |
29146783 |
ccacaataataaaaattgaagtccatagttcaacttgaaacataatactatcaataattttgtaataattctttaatcaccttatatttcctacccaatg |
29146684 |
T |
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| Q |
118 |
ttcatcatggacatctctttgcttatcattggtttcatgttattatta----tattattttagtttagttaatatatcgtctttgcttatgtcacgagtt |
213 |
Q |
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| T |
29146683 |
ttcatcatggacatctctttgcttaccattggtttcatgttattattaattatattattttagtttagttaatatatcgtctttgcttatgtcacgagtt |
29146584 |
T |
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| Q |
214 |
tcctcgggttctctcttattcccttttctcattggttcccaatcttcttttctaacacgcaactttcaacatcataccccccactttcacatttaatacc |
313 |
Q |
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| T |
29146583 |
tcctcgggttctctcttattcccttttctcattggttcccaatcttcttttctaacacgcaactttcaacatcataccccccactttcacatttaatacc |
29146484 |
T |
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| Q |
314 |
ata |
316 |
Q |
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||| |
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| T |
29146483 |
ata |
29146481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 422 - 500
Target Start/End: Complemental strand, 29146345 - 29146267
Alignment:
| Q |
422 |
acatatttattttgttgggtccaatatggggtactctgagaaggcacaagtagtagaaggagggtttgaatcagaaaat |
500 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29146345 |
acatatttatttttttgggtccaatatggggtactctgagaaggcacaagtagtagaaggagggtttgaatcagaaaat |
29146267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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