View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8736_low_2 (Length: 489)
Name: NF8736_low_2
Description: NF8736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8736_low_2 |
 | |
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| [»] scaffold0295 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 24564913 - 24565336
Alignment:
| Q |
18 |
cactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24564913 |
cactgcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactgattgatgaaaaatgtggccttgatg |
24565012 |
T |
|
| Q |
118 |
ccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24565013 |
ccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattca |
24565112 |
T |
|
| Q |
218 |
catcaaaggtccgcatcctttgtataaagatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24565113 |
catcaaaggtccgcatcctttgtataaagatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaa |
24565212 |
T |
|
| Q |
318 |
aaacatacttgaagggaaccagaaatgtccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24565213 |
aaacatacttgaagggaaccagaaatgtccatcataaattagaaaatat------ataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaac |
24565306 |
T |
|
| Q |
418 |
ttataatatttttctattttgaattataag |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
24565307 |
ttataatatttttctattttgaattataag |
24565336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 14164926 - 14165020
Alignment:
| Q |
100 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
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|
| T |
14164926 |
aaaaatgtggccttgatgctcaactcctttcctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
14165020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 22 - 364
Target Start/End: Complemental strand, 45533138 - 45532792
Alignment:
| Q |
22 |
gcaccgactactgtgtgacttcgtcactgccacagacaccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccct |
121 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
45533138 |
gcaccgactactttgtgacttcttcactaccaccgacaccgaaatgtcaccatttctccatcgaaaaa---------------tgtggccttgatgcccc |
45533054 |
T |
|
| Q |
122 |
agtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatc |
221 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |
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|
| T |
45533053 |
actcctttcctatttcttgatcttttctctatctctacaaaaccaaatgtaataaagatcatttggtaaggatgaaatttgaatgacaaaaattcagatc |
45532954 |
T |
|
| Q |
222 |
aaaggtccgcatcctttgta---------------taaagat----atacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaatt |
302 |
Q |
| |
|
|||||| | ||||||||||| || |||| ||| | |||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
45532953 |
aaaggttcacatcctttgtaatttttcttataatgtatagataaagatatagattaagatgactaaatatgaaaaactaattctctcaaaaacatacaat |
45532854 |
T |
|
| Q |
303 |
ataaacaattctgaaaaacatacttgaagggaaccagaaatgtccatcataaattagaaaat |
364 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
45532853 |
ataaacgattatgaaaaacatacttgacgggaaccagaaatctccatcataaattagaaaat |
45532792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 58 - 470
Target Start/End: Original strand, 44339074 - 44339478
Alignment:
| Q |
58 |
caccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctct |
157 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||| | | |||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
44339074 |
caccgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggccttgattctcccctcctttcctatttcttcatcttttctctgtctct |
44339173 |
T |
|
| Q |
158 |
acaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatccttt-------gtataaagat-- |
248 |
Q |
| |
|
|||| ||||| ||||| | |||||||| ||||||||||||||| |||||| |||||| | ||||||||||| |||||||| || || |||| |
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|
| T |
44339174 |
acaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcgaaatcaaaggtccacatccttttgttatagtgtatagataa |
44339273 |
T |
|
| Q |
249 |
--atacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatgtc |
346 |
Q |
| |
|
||| | ||||| || ||| ||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||| | |||| || |
|
|
| T |
44339274 |
agatatagattaaaattacttaatatgaaaaactaattctctcaaaaacataaacta----------tgaaaaacacattggaagggaacgataaatatc |
44339363 |
T |
|
| Q |
347 |
catcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataa |
446 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |||| || |||||||||||| |
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|
| T |
44339364 |
catcgtaaattagaaaatat------ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaattataa |
44339454 |
T |
|
| Q |
447 |
gtggtcatattataacccaatgat |
470 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
44339455 |
ttggtcatattataactcaatgat |
44339478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 59 - 467
Target Start/End: Complemental strand, 44335899 - 44335499
Alignment:
| Q |
59 |
accgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctcta |
158 |
Q |
| |
|
||||||||||||| | ||||||||| | ||| | | |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |
|
|
| T |
44335899 |
accgaaatgtctcgacttctctatcaataaagttgctgatgaaaaatgtggccttgatgctcccctcctttcctatttcttcatcttttctccgtctcta |
44335800 |
T |
|
| Q |
159 |
caataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtccgcatcctt-------------tgtataaa |
245 |
Q |
| |
|
||| ||||| ||||| | |||||||| ||||||||||||||| |||||| |||||| | ||||||||||| ||||||| || ||||| |
|
|
| T |
44335799 |
caaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcaaaatcaaaggtccacatccttttgttatagtgtatggataaa |
44335700 |
T |
|
| Q |
246 |
gatatacatattaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattctgaaaaacatacttgaagggaaccagaaatgt |
345 |
Q |
| |
|
||||| | ||||| || || ||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||| | |||| | |
|
|
| T |
44335699 |
gatat--agattaaaattccttaatatgaaaaattaattctctcaaaaacataaaata----------tgaaaaacatactcgaagggaacgataaatat |
44335612 |
T |
|
| Q |
346 |
ccatcataaattagaaaatatataacgataattgtcaaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattata |
445 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||| ||| |||| || ||||||||||| |
|
|
| T |
44335611 |
ccatcgtaaattagaaaatat------ataattgtcaaatctaaaaaaagaaatatcatgaagaataaaaactgctaa---ttttatactttgaattata |
44335521 |
T |
|
| Q |
446 |
agtggtcatattataacccaat |
467 |
Q |
| |
|
| |||| |||||||||| |||| |
|
|
| T |
44335520 |
actggtaatattataactcaat |
44335499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 476
Target Start/End: Complemental strand, 45532795 - 45532704
Alignment:
| Q |
382 |
aaatcttaaaaaagtaatatcttgaagaataaaaacttataatatttttctattttgaattataagtggtcatattataacccaatgatcagtat |
476 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
45532795 |
aaatctttaaaatgtaatatctttaagaataaaaacttcaaatttttt---attttgaattataattggtcatattataacccaatgatgagtat |
45532704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 29633485 - 29633314
Alignment:
| Q |
58 |
caccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctct |
157 |
Q |
| |
|
|||| |||| || ||||||| |||||| |||||||| | ||||||| |||| ||||| ||||| || ||||||||||||| || |||||| | |||| |
|
|
| T |
29633485 |
caccaaaatatccccatttccctatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctct |
29633386 |
T |
|
| Q |
158 |
acaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaattcacatcaaaggtcc |
229 |
Q |
| |
|
||| ||||| |||||||| ||||||| | |||| || |||| |||||| |||||| || || |||||||| |
|
|
| T |
29633385 |
tcaagaccaagtgtaataacgatcacttgctaagaatagaattggaatgataaaaatccagattaaaggtcc |
29633314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 40389416 - 40389260
Alignment:
| Q |
58 |
caccgaaatgtctccatttctctatcgaaaaactggttgatgaaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctct |
157 |
Q |
| |
|
|||| ||||||| ||||||| ||||| |||||||| | ||||||| |||| ||||| ||||| || ||||||||||||| || |||||| | |||| |
|
|
| T |
40389416 |
caccaaaatgtccccatttccatatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctct |
40389317 |
T |
|
| Q |
158 |
acaataccaaatgtaataaagatcactaggtaaggatgaaatttgaatgacaaaaat |
214 |
Q |
| |
|
||| | ||| |||||||| ||||||| | |||| || |||| |||||| |||||| |
|
|
| T |
40389316 |
tcaagatcaagtgtaataacgatcacttgctaagaatagaattggaatgataaaaat |
40389260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 19190196 - 19190095
Alignment:
| Q |
255 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaattataaacaattct-gaaaaacatacttgaagggaaccagaaatgtccatcata |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19190196 |
attaagatgactaaatatgaaaaactaattctctcaaaaacataaaatataaacaattctaaaaaaacatacttgaagggaaccagaaatgtcaatcata |
19190097 |
T |
|
| Q |
354 |
aa |
355 |
Q |
| |
|
|| |
|
|
| T |
19190096 |
aa |
19190095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 16351 - 16257
Alignment:
| Q |
100 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcactaggtaaggat |
194 |
Q |
| |
|
||||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||||| ||| ||||| |||||||| ||||||| | ||||||| |
|
|
| T |
16351 |
aaaaatgtggccttgatgctcaactccttttctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaaggat |
16257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 23096176 - 23096260
Alignment:
| Q |
100 |
aaaaatgtggccttgatgccctagtcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcact |
184 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||| |||||||| |||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
23096176 |
aaaaatgtagccttgatgccccacccctttcctatttcttcaccttttctccatctcttcaaaaccaagtgtaataatgatcact |
23096260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 24867465 - 24867524
Alignment:
| Q |
124 |
tcctttcctatttcttcatcttttctctatctctacaataccaaatgtaataaagatcac |
183 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||| ||||| | ||||||| ||||| |
|
|
| T |
24867465 |
tcctttcctatttcttcttcttttcactgtctctacaaaaccaagtctaataaaaatcac |
24867524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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