View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8736_low_5 (Length: 322)
Name: NF8736_low_5
Description: NF8736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8736_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 306
Target Start/End: Complemental strand, 25953584 - 25953301
Alignment:
| Q |
23 |
tttcaaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953584 |
tttcaaacacaagatagtcaaatcaaatatagagaaggtcagcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtca |
25953485 |
T |
|
| Q |
123 |
atctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatcccg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953484 |
atctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatcccg |
25953385 |
T |
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| Q |
223 |
caaccaccataacaaatattagtattagactgtagaatttcaaatcggagtagattgtccttcgtcgatatacgattatgtatt |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25953384 |
caaccaccgtaacaaatattagtattagactgtagaattccaaatcggagtagattgtccttcgtcgatatacgattatgtatt |
25953301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 25951980 - 25951696
Alignment:
| Q |
26 |
caaacacaagatagtcaaatcaaatatagagaaggtcggcattttc-tagactctcctcctaagcttttaaactgagtaaggtgataacataga---gtc |
121 |
Q |
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||||||||||| | |||||||||| | | ||||||| |||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||| ||| |
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| T |
25951980 |
caaacacaagacaaccaaatcaaatggaaataaggtcgccatttttatagactctcctcctaagctttcaaattgagtaaggtgataagaaagaatcgtc |
25951881 |
T |
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| Q |
122 |
aatc-tgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatcc |
220 |
Q |
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| | ||||||||||| | |||||||||| ||| |||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||| ||||| |
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| T |
25951880 |
aggcctgcttagtgaagaattaaccaatgtagattgagaaatcaaatgctaccatcaaaatcaaaacccaaaaataagtgattgatgctttccttcatcc |
25951781 |
T |
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| Q |
221 |
cgcaaccaccataacaaatattagtattagactgtagaatttcaaatcggagtagattgtccttcgtcgatatacgattatgtat |
305 |
Q |
| |
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|||||||| ||||||||||||| ||||| ||||||||| || ||| ||| ||||| |||||||||||||||||||| ||||| |
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| T |
25951780 |
cgcaaccattggaacaaatattagtgttagattgtagaattccacatcagagcagattttccttcgtcgatatacgattgtgtat |
25951696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 305
Target Start/End: Complemental strand, 25953039 - 25952756
Alignment:
| Q |
25 |
tcaaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtcaat |
124 |
Q |
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|||||||||||| | ||||||||| | | ||||||||| |||| |||| ||| ||||||||||||| ||| |||||||||| | | | ||||||| | |
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| T |
25953039 |
tcaaacacaagacaaccaaatcaaacaaacagaaggtcgccattgtctaaactagcctcctaagctttcaaattgagtaaggtactcagaaagagtcatt |
25952940 |
T |
|
| Q |
125 |
c----tgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatcc |
220 |
Q |
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||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
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| T |
25952939 |
ggacatgcttagtgaatatttaaccaatgcaaaatgagaaatcaaacgctaccatcaaaatcacaacccaagaa-tagtgattgacattttcctccatcc |
25952841 |
T |
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| Q |
221 |
cgcaaccaccataacaaatattagtattagactgtagaatttcaaatcggagtagattgtccttcgtcgatatacgattatgtat |
305 |
Q |
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|||||||| || || |||||||| ||||||||||||||| || | | ||| ||||||| ||||||||||||| |||||||||| |
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| T |
25952840 |
cgcaaccatcagaaataatattagagttagactgtagaattccacaacagagcagattgttcttcgtcgatatatgattatgtat |
25952756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 25952493 - 25952294
Alignment:
| Q |
26 |
caaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtcaat- |
124 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||| || ||| ||||||||||||||| | | | ||| | |
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| T |
25952493 |
caaacacaggatagtcaaatcaaatgaagagaaggtcgacattt--------ctcctcctaagcgttcaaattgagtaaggtgataagaaataatcattg |
25952402 |
T |
|
| Q |
125 |
---ctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatccc |
221 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
25952401 |
tacctgcttagtgaatacttaaccaatgcagaatgagaaatcaaacgctaccatcaaaatcaaaacccaaaaataagtgattgacactttcctccatccc |
25952302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 305
Target Start/End: Complemental strand, 25951285 - 25951161
Alignment:
| Q |
181 |
tcacaacccaaaaacaagtgattgacactttcctccatcccgcaaccaccataacaaatattagtattagactgtagaatttcaaatcggagtagattgt |
280 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| | ||||| |||||||||||| |||||| |||||||| || ||||||| ||| ||| |
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| T |
25951285 |
tcacaacccaaaaataagtgattgacactttcttccattatgtaaccaatggaacaaatattagagttagaccgtagaattccacatcggagcagactgt |
25951186 |
T |
|
| Q |
281 |
ccttcgtcgatatacgattatgtat |
305 |
Q |
| |
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||||||||||||||| ||| ||||| |
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| T |
25951185 |
ccttcgtcgatatacaattgtgtat |
25951161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 25951323 - 25951286
Alignment:
| Q |
125 |
ctgcttagtgaatacttaaccaatgcagagtgagaaat |
162 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||| |
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| T |
25951323 |
ctgcttagtgaatacataaccaatgcagaatgagaaat |
25951286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 18642405 - 18642602
Alignment:
| Q |
26 |
caaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtca--- |
122 |
Q |
| |
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|||||||||||||| |||||||| ||||||| ||| |||||||||||||| |||||||| |||| | ||||| | ||||| | | ||| || |
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| T |
18642405 |
caaacacaagatagccaaatcaatggaagagaagatcgacattttctagactcacctcctaaactttcgtattgagtgacgtgatcagaaagacacatca |
18642504 |
T |
|
| Q |
123 |
-atctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatc |
219 |
Q |
| |
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| ||||| ||||||| |||||| |||||| ||||||| || | |||||| ||||| |||||| |||||| |||||||||| |||||||||||| |
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| T |
18642505 |
gacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaactagtgattgacgctttcctccatc |
18642602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 32155305 - 32155345
Alignment:
| Q |
178 |
aaatcacaacccaaaaacaagtgattgacactttcctccat |
218 |
Q |
| |
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||||||||||||| ||| || |||||||||||||||||||| |
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| T |
32155305 |
aaatcacaacccataaagaaatgattgacactttcctccat |
32155345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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