View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_high_7 (Length: 311)
Name: NF8737_high_7
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 10242277 - 10242028
Alignment:
| Q |
1 |
atgtaattaaatattagtatgtggttagtgagtggacaatgatggaggaattgattagggatttcactttctgacaaagcttttagcacaaatcgttata |
100 |
Q |
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| T |
10242277 |
atgtaattaaatattagtatgtggttagtgagtggacaatgatggaggaattgattagggatttcactttctgacaaagcttttagcacaaatcgttata |
10242178 |
T |
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| Q |
101 |
cataacaaatgttacacaaggtaagtgctctagtggttactttgccttttatacttggtgacatgaccttcatgggaccaaaatttaggtaatttgtatc |
200 |
Q |
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| T |
10242177 |
cataacaaatgttacacaaggtaagtgctctagtggttactttgccttttatgcttggtcacatgacctttatgggacc-aaatttaggtaatttgtatc |
10242079 |
T |
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| Q |
201 |
cctacataaggaacatagtacataccgaatcacatgaaatatgtacctttt |
251 |
Q |
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| T |
10242078 |
cctacataaggaacatagtacatacataatcacatgacatatgtacctttt |
10242028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 10264211 - 10264095
Alignment:
| Q |
132 |
agtggttactttgccttttata--cttggtgacatgaccttcatgggaccaaaatttaggtaatttgtatccctacataaggaacatagtacataccgaa |
229 |
Q |
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| T |
10264211 |
agtggttactttgccttttatatgcttgatgacatatccaacatgggaccaaagtt-aggtaatttgtatccctaaataaggaacatagcac-tacctaa |
10264114 |
T |
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| Q |
230 |
tcacatgaaatatgtacct |
248 |
Q |
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|||||| |||||||||||| |
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| T |
10264113 |
tcacattaaatatgtacct |
10264095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 10264313 - 10264235
Alignment:
| Q |
22 |
tggttagtgagtggacaatgatggaggaattgattagggatttcactttctgacaaagcttttagcacaaatcgttata |
100 |
Q |
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|||||||| ||||| ||| ||||||| |||||| || |||||||||| |||||||||||||||| |||| |||||| |
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| T |
10264313 |
tggttagtaggtggaaaattgtggaggatttgattgggaatttcactttgtgacaaagcttttagcctaaatggttata |
10264235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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