View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_low_11 (Length: 294)
Name: NF8737_low_11
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 32944571 - 32944834
Alignment:
| Q |
18 |
acaattattggttgtattagtactgtaaagtggctttataatttcacacccataactctttttatcttactcagaaactcagtacatttcttttggttga |
117 |
Q |
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| T |
32944571 |
acaattattggttgtattagtactgtaaagtggctttataatttcacacccataactctttttatcttactcagaaactcagtacatttcttttggttga |
32944670 |
T |
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| Q |
118 |
gaaattaaaaacttatggtacgttaataacgccagaaacaaataaagttgatgtatatacacaaccagaaaagggcttataagtgggctctatatttcag |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32944671 |
gaaa----aaacttatggtacgttaataacgccagaaacaaataaagttgatgtatatacacaaccagaaaaaggcttataagtgggctctatatttcag |
32944766 |
T |
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| Q |
218 |
cagattcctttcccattactttatataaattaaatgtgatgtgaatctcattcttagctgagtataat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32944767 |
cagattcctttcccattactttatataaattaaatgtgatgtgaatctcattcttagctgaatataat |
32944834 |
T |
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