View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_low_14 (Length: 205)
Name: NF8737_low_14
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 42046187 - 42046014
Alignment:
| Q |
19 |
gcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatggaatcaaccgtcttgtttcgagtatcaa |
118 |
Q |
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| T |
42046187 |
gcatataggtcaactaagggcaaagaagcttacttatttaaaggagaccaatatgctcgtatagactat--ggaatcaaccgtcttgtttcgagtatcaa |
42046090 |
T |
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| Q |
119 |
gagcattaaaggtttttcatctttttgtggcacaatctttgaaaatgggtcatttgatgcagctttttcttctcac |
194 |
Q |
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| T |
42046089 |
gagcattaaaggtttttcatctttctgtggcacaatctttgaaaatgggtcatttgatgcagctttttcttctcac |
42046014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 3352407 - 3352579
Alignment:
| Q |
19 |
gcatataggtcaactaagggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatggaatcaaccgtcttgtttcgagtatcaa |
118 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||| ||||||| ||||||||| ||| |||||||| |
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| T |
3352407 |
gcatttaggtcaactaagggcaaataagtttacttattcaaaggagacaagtatgctcgtataga--ttatggaaccaaccgtctggttcaaagtatcaa |
3352504 |
T |
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| Q |
119 |
gagcatta---aaggtttttcatctttttgtggcacaatctttgaaaatgggtcatttgatgcagctttttcttctca |
193 |
Q |
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| T |
3352505 |
gaacattatcgacgggtttatgtgtttccgtggcacaatctttgaaaatgg---aattgatgcagcttttgcttctca |
3352579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 42471354 - 42471310
Alignment:
| Q |
39 |
caaagaagcttacttattcaaaggagaccaatatgctcgtataga |
83 |
Q |
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| T |
42471354 |
caaagaagcttacttattcaaaggagacaagtatgctcgtataga |
42471310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 14452705 - 14452756
Alignment:
| Q |
36 |
gggcaaagaagcttacttattcaaaggagaccaatatgctcgtatagactat |
87 |
Q |
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||||||||||| | ||||||||||||||||| | |||||||||||||||||| |
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| T |
14452705 |
gggcaaagaagttcacttattcaaaggagacaagtatgctcgtatagactat |
14452756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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