View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_low_2 (Length: 474)
Name: NF8737_low_2
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 6007272 - 6006811
Alignment:
| Q |
1 |
agcttcgcaaggttaatctctctggtcattactatatgaaagactcaatgcttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgtt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6007272 |
agcttcgcaaggttaatctttctggtcattactatatgaaagactcaatgcttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgtt |
6007173 |
T |
|
| Q |
101 |
gaaatgctcgttcataactcattatggggttgcttctgctatttgcgagaggccgggtttgaagtctctttcttttagtaaattgaggttatttggtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6007172 |
gaaatgctcgttcataactcattatggggttgcttctgctatttgcgagaggccgggtttgaagtctctttcttttagtaaattgaggctatttggtatt |
6007073 |
T |
|
| Q |
201 |
ggtaatcacaatatttttattgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattcatatatctcggatcgattgctttcatcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6007072 |
ggtaatcacaatatttttattgactcgttggtgaaattgaaaggcttaacttgtcttgatttgtcgtattcatatatctcggatcgattgctttcatcta |
6006973 |
T |
|
| Q |
301 |
ttgcagagaaaggatttcctttaaggaagcttgtgcttcaaggttgccttgactattcctatgttggactctataacttgttgtctaattgtcattattt |
400 |
Q |
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| T |
6006972 |
ttgcagagaaaggttttcctttaaggaagcttgtgcttcaaggttgccttgactattcctatgttggactctataacttgttgtctaattgtcattattt |
6006873 |
T |
|
| Q |
401 |
tcaatatttggatcttcaaagtgctgattttctgaatgattcacatgtccttaagttgtctc |
462 |
Q |
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| T |
6006872 |
tcaatatttggatcttcaaagtgctgattttctgaatgattcacacgtccttaagttgtctc |
6006811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 461
Target Start/End: Original strand, 1527559 - 1527818
Alignment:
| Q |
199 |
ttggtaatcacaatatttttattgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattcatatatctcggatcgattgctttcatc |
298 |
Q |
| |
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|||| |||| ||| ||||||||| | |||||||||| |||| ||||||||||||| ||||||| || ||||| | |||| | ||| |||||||||||| |
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| T |
1527559 |
ttggaaatctcaacatttttattcagtcgttggtgaatttgatgggcttaacttgtcttgatttatcatattcgtttatcccagatgaattgctttcatc |
1527658 |
T |
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| Q |
299 |
tattgcagagaaaggatttcctttaaggaagcttgtgcttcaaggttgccttgactattcctatgttggactctataacttgttgtctaattgtcattat |
398 |
Q |
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| T |
1527659 |
tgttgcagagaaaggtcttccgattaggaaactcttcctccaaggatgctttg---atacttatgttggaatctttaacttattgtcaaagtgtcaattt |
1527755 |
T |
|
| Q |
399 |
tttcaatatttggatcttcaaagtgctgattttctgaatgattcacatgtccttaagttgtct |
461 |
Q |
| |
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||||||||||||||||||||| | | | ||| ||||||||| |||||| || |||||||| |
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| T |
1527756 |
attcaatatttggatcttcaaaattccaagtttatgaatgatttgcatgtcattgagttgtct |
1527818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 547872 - 547773
Alignment:
| Q |
1 |
agcttcgcaaggttaatctctctggtcattactatatgaaagactcaatgcttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgtt |
100 |
Q |
| |
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|||| |||||||||||| | ||||||||||||||||| || |||||| ||||||| || ||||| | || ||||||||||| |||||| |||||||||| |
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| T |
547872 |
agctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagtttctcgaagagtttgtgatgtt |
547773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 441
Target Start/End: Original strand, 12118663 - 12118905
Alignment:
| Q |
199 |
ttggtaatcacaatatttttattgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattcatatatctcggatcgattgctttcatc |
298 |
Q |
| |
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|||| |||| ||| || |||||||| |||||||||| |||| ||||||||||| | ||||||| || ||||| | |||| | ||| ||||||||||| |
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| T |
12118663 |
ttggaaatctcaacatctttattgagtcgttggtgaatttgacgggcttaacttctcttgatttatcatattcgtttatcccagatgaattgctttcata |
12118762 |
T |
|
| Q |
299 |
tattgcagagaaaggatttcctttaaggaagcttgtgcttcaaggttgccttgactattcctatgttggactctataacttgttgtctaattgtcattat |
398 |
Q |
| |
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| |||||||||||| ||||| | ||||| || | || || || | | ||| |||| | ||| ||||| ||| |||||| ||||| || ||||| | | |
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| T |
12118763 |
tgttgcagagaaagctcttcctattaggaaactcttcctccagggatactttggctatacttattttggaatctttaacttattgtcaaagtgtcaattt |
12118862 |
T |
|
| Q |
399 |
tttcaatatttggatcttcaaagtgctgattttctgaatgatt |
441 |
Q |
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| T |
12118863 |
attcaatatttggatcttcaaaatgctaagtttatgaatgatt |
12118905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 3438026 - 3438112
Alignment:
| Q |
219 |
attgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattcatatatctcggatcgattgctttcatctattgca |
305 |
Q |
| |
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||||||| ||||||||| ||||||| ||||||||| |||||||||||| ||||| |||| ||||| ||| ||||| ||||||||| |
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| T |
3438026 |
attgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatgtatcccggatgaattactttcctctattgca |
3438112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 547641 - 547596
Alignment:
| Q |
217 |
ttattgactcgttggtgagattgaagggcttaacttgtattgattt |
262 |
Q |
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|||||||||||||| || | |||||||||||||||||| ||||||| |
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| T |
547641 |
ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt |
547596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 55908104 - 55908152
Alignment:
| Q |
219 |
attgactcgttggtgagattgaagggcttaacttgtattgatttgtcgt |
267 |
Q |
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|||| |||||||||||| ||||| |||||||||||| || ||||||||| |
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| T |
55908104 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgt |
55908152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 44244869 - 44244811
Alignment:
| Q |
51 |
cttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgttgaaatgctc |
109 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||| |
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| T |
44244869 |
cttttgaacatgtgtaagaattgtgagtttcttgaagaggttaggatgttgaaatgctc |
44244811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 10615317 - 10615269
Alignment:
| Q |
215 |
ttttattgactcgttggtgagattgaagggcttaacttgtattgatttg |
263 |
Q |
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|||||||||||| |||||||| ||||||||||| |||||| |||||||| |
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| T |
10615317 |
ttttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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