View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_low_3 (Length: 470)
Name: NF8737_low_3
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 51106448 - 51106015
Alignment:
| Q |
19 |
tttatggggtgtaatcccttttgacggagcaagcagcgacgatgcaaatgtatatggatnnnnnnngatttcttttgagggagaacatactcgtaaaaat |
118 |
Q |
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| T |
51106448 |
tttatggggtgtaatcccttttgatggagcaagcagcgacgatgcaaatatatatagatgaaaaaagattttttttgagggaaaacatattcgtaagaat |
51106349 |
T |
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| Q |
119 |
ggatgatctcatatataagggagaaattgttggtacatcaagttgatctcatatttgatcacattactcactatatatgtcnnnnnnntcacagaaagtt |
218 |
Q |
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| T |
51106348 |
cgatgatctcatatataagggagaaattgttggtacatcaagttgatctcatatttgaccactttagtcactatatatgtcaaaaaaatcacagaaagtt |
51106249 |
T |
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| Q |
219 |
gttccaagctgaccatttagaaagatcgattttataaaaacaccatagcacaggtgtatacttaacaaaacaaagcttgaacacac-nnnnnnncaaaga |
317 |
Q |
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| T |
51106248 |
gttccaagctgaccatttagaaagatcgattttataaaaacaccatagcacaagtgtatacttaaccaaacaaagcttgaacacacaaaaaaaacaaaga |
51106149 |
T |
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| Q |
318 |
ggccgtgcacacaacaatacgattttggtctcacaacagagaaagaaacaaaccaatcatttttaatttcaatatatttaacttaaaagaaatgttaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51106148 |
ggccgtgcacacaacaatacgattttggtctcacaacagagaaagaaacaaaccaatcatttttaatttcaatatatttaactt-aaagaaatgttaaca |
51106050 |
T |
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| Q |
418 |
agtaccttcgggatactctttaagaaccataaata |
452 |
Q |
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|||| ||||||| |||||||||||||||||||||| |
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| T |
51106049 |
agtaacttcgggttactctttaagaaccataaata |
51106015 |
T |
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