View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8737_low_4 (Length: 452)
Name: NF8737_low_4
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 5273362 - 5273779
Alignment:
| Q |
18 |
aattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacagtcccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273362 |
aattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagcaccaggtttcaacacagtcccc |
5273461 |
T |
|
| Q |
118 |
cttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcctcnnnnnnnnnnnnngattct |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5273462 |
cttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcctcaaaaaagcaaaaagattct |
5273561 |
T |
|
| Q |
218 |
cagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnnnnnngattctagcagtggtgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5273562 |
cagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagtta------catcatcatcatcagattctagcagtggtgg |
5273655 |
T |
|
| Q |
318 |
cttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273656 |
cttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattc |
5273755 |
T |
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| Q |
418 |
catacactttcctcattcatctca |
441 |
Q |
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|| ||||||||||||||||||||| |
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| T |
5273756 |
cacacactttcctcattcatctca |
5273779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
313 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
412 |
Q |
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||||| |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| |||| |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
413 |
a |
413 |
Q |
| |
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| T |
36151243 |
a |
36151243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
319 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
413 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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