View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8737_low_6 (Length: 347)
Name: NF8737_low_6
Description: NF8737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8737_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 84 - 332
Target Start/End: Original strand, 26305669 - 26305917
Alignment:
| Q |
84 |
gaaggattgtatattataatttggatggattgtcatattatttagtttcctgtcaattttattaagaatgnnnnnnncatgttacttgcaaaagagtaaa |
183 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26305669 |
gaaggattgtatattttaatttggatggattgtcatattatttagtttcccgtcaattttattaagaatgaaaaaaacatgttacttgcaaaagagtaaa |
26305768 |
T |
|
| Q |
184 |
tattattacattacaagtcttcaaacagtagcatcattttaattttatatggagatcctccaggttacccatattgccaccaaattcaatgccactccat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26305769 |
tattattacattacaagtcttcaaacagtagcatcattttaattttatatggagatcctccaggttatccatattgccaccaaattcaatgccactccat |
26305868 |
T |
|
| Q |
284 |
atttgattcttctatggccacaatgcattgatatgaaaattcttttaag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26305869 |
atttgattcttctatggccacaatgcattgatatgaaaattcttttaag |
26305917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 193 - 328
Target Start/End: Complemental strand, 8531163 - 8531027
Alignment:
| Q |
193 |
attacaagtcttcaaacagtagcatcattttaattttatatggagatcctccaggttacccatattgccaccaaattcaatgccactccatatttgattc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8531163 |
attacaagtcttcaaacagtagcatcattttaattttatatggagctcctccaagttacccatatagccaccaaatccaatggcactccatatttgattc |
8531064 |
T |
|
| Q |
293 |
ttctatggccacaatgcat-tgatatgaaaattcttt |
328 |
Q |
| |
|
| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8531063 |
tgctacagccacaatgcatctgatatgaaaattcttt |
8531027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 8531416 - 8531384
Alignment:
| Q |
166 |
tacttgcaaaagagtaaatattattacattaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
8531416 |
tacttgcaaaagagtaaatattattacactaca |
8531384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 5155074 - 5155210
Alignment:
| Q |
193 |
attacaagtcttcaaacagtagcatcattttaattttatatggagatcctccaggttacccatattgccaccaaattcaatgccactccatatttgattc |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
5155074 |
attacaagtcttcagacagtagcatcattttaattttatatggagctcctccaagttacccatatagccaccaaatccaatggcactccatatttgattc |
5155173 |
T |
|
| Q |
293 |
ttctatggccacaatgcat-tgatatgaaaattcttt |
328 |
Q |
| |
|
| ||| |||||| ||||| || ||| |||||||||| |
|
|
| T |
5155174 |
tgctacagccacagtgcatctggtataaaaattcttt |
5155210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 3384480 - 3384521
Alignment:
| Q |
193 |
attacaagtcttcaaacagtagcatcattttaattttatatg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3384480 |
attacaagtcttcaaacagtagcatcattttaattttatatg |
3384521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 3384321 - 3384355
Alignment:
| Q |
164 |
gttacttgcaaaagagtaaatattattacattaca |
198 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
3384321 |
gttacttgcagaagagtaaatattattacattaca |
3384355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 5154823 - 5154855
Alignment:
| Q |
166 |
tacttgcaaaagagtaaatattattacattaca |
198 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
5154823 |
tacttgcagaagagtaaatattattacattaca |
5154855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 19397541 - 19397672
Alignment:
| Q |
193 |
attacaagtcttcaaacagtagcatcattttaattttatatggagatcctccaggttacccatattgccaccaaattcaatgccactccatatttgattc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
19397541 |
attacaagtcttcaaacagtagcatcattttaaatttatatggagctactccaggttacccatatagccaccaaat-----gacactccatatttgattc |
19397635 |
T |
|
| Q |
293 |
ttctatggccacaatgcat-tgatatgaaaattcttt |
328 |
Q |
| |
|
| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
19397636 |
tgctatagccacaatgcatctgatatgaaaattcttt |
19397672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University