View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8738_low_1 (Length: 543)
Name: NF8738_low_1
Description: NF8738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8738_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Original strand, 1921901 - 1922429
Alignment:
| Q |
14 |
atgaataaaatttgacataattagggatccttttagagagagatggagggagggattaggaaagaccgtgaaagtgatgccaaaatatgggacacccgtg |
113 |
Q |
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| T |
1921901 |
atgaataaaatttgacataattagggatccctttagagagagatggagggagggattaggatagaccgtgaaagtgatgccaaaatatgggacacccgtg |
1922000 |
T |
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| Q |
114 |
tacacaagaccactatcacatttttacactatac--------acacaaatttagtcgaataatgatggtcaaggtttagattttatggtcatgttgatgg |
205 |
Q |
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| T |
1922001 |
tacacaagacccctatcacatttttacactatacatagatacacacaaatttagtcgaataatgatagtcaaggtttagttttgatggtcatgttgatgg |
1922100 |
T |
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| Q |
206 |
acaatataatttgaatttgatgctataaaactttgtttataaacaccacatgtacatttcactttagatacattcattcaatcaatgaacttattttact |
305 |
Q |
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| T |
1922101 |
acaatataatttgaatttgatgctataaaactttgtttataaacaccacatgtacgtttcactttagatacattcagtcaatcaattaacttattttact |
1922200 |
T |
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| Q |
306 |
cgcattttatcatttttataaacatttaaatacattgaaacgacttgaacccaagcatgtcatacccatatat--gagtcaaaaaatcacaaacctctac |
403 |
Q |
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| T |
1922201 |
cgcattttatcatttttataaatatttaaatacattgaaacgacttgaacacaagcatgtcatatccatatataagagtaaaaaaatcacaaacccctac |
1922300 |
T |
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| Q |
404 |
gct--------tctaatcgagttagttttggatattcttgcttaaacattgtaacaaacatgtcttctttcnnnnnnntattcttgcttgttacaatgtt |
495 |
Q |
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| T |
1922301 |
gctatcaggaacctaatcgagttagttttggatattcttgcttaaacattgtaacaagcatgtcttctttc-aaaaaatattcttgcttgttacaatatt |
1922399 |
T |
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| Q |
496 |
taaggaacctaatcaagttatagccaaatc |
525 |
Q |
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| T |
1922400 |
taaggaacctaatcgagttatagccaaatc |
1922429 |
T |
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