View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8738_low_2 (Length: 289)
Name: NF8738_low_2
Description: NF8738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8738_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8686837 - 8686585
Alignment:
| Q |
18 |
cgtatctggcacaattccttcttcgtcaacttcaaacgtaacacattcttcaatagtgtcccatagctcatcatcaatgcctatgatgtggtagtacatc |
117 |
Q |
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| T |
8686837 |
cgtatctggcacaattccatcttcgtcaacttcaaacgtaacaccttcttcaatagtgtcccatagctcatcatcaatgcctat-atgtggcagtacatc |
8686739 |
T |
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| Q |
118 |
ttgtttttccactaggaaaattgagcagcatctccattaaaggatgcaggtcttgcagaaaagcagttattatcagaggttgaagtgcagggctaagagg |
217 |
Q |
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| T |
8686738 |
ttgtttttccactagaaaaattgagcagcatctccattaaaggatgcaggtcttgcagaaaagcagttattatcggaggttgaagtgcagggctaagagg |
8686639 |
T |
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| Q |
218 |
tgttgttggatgttttagaggctgaagtatccctctcaggagtagacatgtttt |
271 |
Q |
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| T |
8686638 |
tgttgttggatgttttagaggctgaagtatccttctcaggagtagacatgtttt |
8686585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 4448200 - 4448291
Alignment:
| Q |
64 |
tcttcaatagtgtcccatagctcatcatcaatgcctatgatgtggtagtacatcttgtttttccactaggaaaattgagcagcatctccatt |
155 |
Q |
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| T |
4448200 |
tcttcaatgatgtcccataaatcatcatcaactcctatgatgagattgtacatcttgtttttccaccttgagaaatgagtagcatctccatt |
4448291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 26010714 - 26010810
Alignment:
| Q |
74 |
tgtcccatagctcatcatcaatgcctatgatgtggtagtacatcttgtttttccactaggaaaattgagcagcatctccattaaaggatgcaggtct |
170 |
Q |
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| T |
26010714 |
tgtcccacaactcatcatcaataccaatgacatgattgtacattttactcttccactaggaaaactgagcaacatatccattgaaggatggaggtct |
26010810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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