View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8739_high_2 (Length: 248)
Name: NF8739_high_2
Description: NF8739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8739_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 21942479 - 21942296
Alignment:
| Q |
16 |
gacatcattcccgagttcctctttaattgcttcattgtattctgcattaaaaacaaatctaaaatcagtgttgatatactgttctttgtaaggatcatgg |
115 |
Q |
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| T |
21942479 |
gacatcattccttagttcctctttaattgcttcattgtattctgcattaaaaataaatctaaaatcagtgttgatatagtgttctttgtaaggatcatgg |
21942380 |
T |
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| Q |
116 |
gtgggttctggaacaggatatttgagtctttcttaagacttatgtggttgcatacacatttgagagacgtacaaaaataacttat |
200 |
Q |
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| T |
21942379 |
gtgggttttggaacaggttatttgagtctatcttatgacttatgtggttgcatatacatttga-agacttacaaaaataacttat |
21942296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 10799712 - 10799889
Alignment:
| Q |
26 |
ccgagttcctctttaattgcttcattgtattctgcattaaaaac-aaatctaaaatcagtgttgatatactgttctttgtaaggatcatgggtgggttct |
124 |
Q |
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| T |
10799712 |
ccgagttcctcttccattgattcattgtattctgccataaaaattaaacctaaaatcagtgttgatatggtgttctttgtaaggatgaagggtgggtttt |
10799811 |
T |
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| Q |
125 |
ggaacaggatatttgagtctttcttaagacttatgtggttgcatacacatttgagagac-gtacaaaaataacttata |
201 |
Q |
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| T |
10799812 |
ggaacaggttatttgagtttatcttatgacttatgcagttgcatacacatttaagagactttacaaaaatatcttata |
10799889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 21942273 - 21942226
Alignment:
| Q |
200 |
tagctgtttacagtcggttattaaaatagcgtacaacaaaaacaatgt |
247 |
Q |
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| T |
21942273 |
tagctgttcacaatcggttattaaaatagcttacaacaaaaacaatgt |
21942226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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