View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8739_low_4 (Length: 238)
Name: NF8739_low_4
Description: NF8739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8739_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 21942224 - 21942011
Alignment:
| Q |
8 |
acattacctcttgattgtagaagtagcttatacctatgtgcttatatcataagtacttattatttaataaacatataaaataaactgtttttcagagtac |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |
|
|
| T |
21942224 |
acattacctcttgattgtataagtagcttatacctatgtgcttatatcataagtacttatt---taataaacacataaaataaactgtttttcagagcac |
21942128 |
T |
|
| Q |
108 |
cctaaggcatgagaatatgcacttctaggatttattagtggtttgcataaagccgtgtaccttttatgcacttcataatcttagtcattttcatatagtt |
207 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
21942127 |
cctaaggtatgagaatatggacttctaggatttattagtggtttgcataaagccatgtaccttttatgcacttcataatcttacttattttcatatagtt |
21942028 |
T |
|
| Q |
208 |
aagaatgggaacaaaat |
224 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
21942027 |
aaaaatgtgaacaaaat |
21942011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 10799959 - 10800166
Alignment:
| Q |
4 |
tactacattacctcttgattgtagaagtagcttatacctatgtgcttatatcataagtacttattatttaataaaca--tata-aaataaactg-ttttt |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||| || ||||| |
|
|
| T |
10799959 |
tactacattacctcttgattgtaaaagtagcttatacatatgtgcttatatcataagtacttattatttaataaacacgtatataattaaattgtttttt |
10800058 |
T |
|
| Q |
100 |
caga-gtaccctaaggcatgagaatatgcacttctaggatttattagtggtttgcataaagccgtgtaccttttatgcacttcataatcttagtcatttt |
198 |
Q |
| |
|
|||| | |||||||||| | |||| |||||||| |||||||||||| ||||| ||| |||||||||||| ||||| ||||||| |
|
|
| T |
10800059 |
cagatgcaccctaaggcgcgtgaat-----------------attagtgg-ttgcataaagccatgtacttttcatgcacttcatagtcttactcatttt |
10800140 |
T |
|
| Q |
199 |
catatagttaagaatgggaacaaaat |
224 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
10800141 |
catatagttaagaatggaaacaaaat |
10800166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University