View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8740_high_1 (Length: 547)
Name: NF8740_high_1
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 20170982 - 20171509
Alignment:
| Q |
1 |
gacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170982 |
gacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctc |
20171081 |
T |
|
| Q |
101 |
caacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctatacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171082 |
caacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctatacat |
20171181 |
T |
|
| Q |
201 |
cgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnnggaacactcaaccag |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
20171182 |
cgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctc-aaaaaaaggaacactcagccag |
20171280 |
T |
|
| Q |
300 |
accatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgt |
399 |
Q |
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| T |
20171281 |
accatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgt |
20171380 |
T |
|
| Q |
400 |
ttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttc |
499 |
Q |
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| T |
20171381 |
ttg--tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttc |
20171478 |
T |
|
| Q |
500 |
gtttgaattgagaatatttgggtcccacgtg |
530 |
Q |
| |
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| T |
20171479 |
gtttgaattgagaatatttgggtcccacgtg |
20171509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 44392692 - 44393219
Alignment:
| Q |
1 |
gacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392692 |
gacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgcttctc |
44392791 |
T |
|
| Q |
101 |
caacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctatacat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392792 |
caacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctatacat |
44392891 |
T |
|
| Q |
201 |
cgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnnggaacactcaaccag |
299 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
44392892 |
cgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctc-aaaaaaaggaacactcagccag |
44392990 |
T |
|
| Q |
300 |
accatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaacccaaaacgaatcatatatgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44392991 |
accatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaacccaaaacgaatcatatatgt |
44393090 |
T |
|
| Q |
400 |
ttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttc |
499 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393091 |
ttg--tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttc |
44393188 |
T |
|
| Q |
500 |
gtttgaattgagaatatttgggtcccacgtg |
530 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44393189 |
gtttgaattgagaatatttgggtcccacgtg |
44393219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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