View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8740_high_2 (Length: 530)
Name: NF8740_high_2
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_high_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 24188783 - 24189297
Alignment:
| Q |
1 |
aacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtt |
100 |
Q |
| |
|
||||||| |||||||||| || ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24188783 |
aacggactcttcatgtcgcgcaaacggcaccgtcaatcgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtt |
24188882 |
T |
|
| Q |
101 |
tccacaaaagacgttaccgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccacca |
200 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24188883 |
tccactaaagacgtcaccgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccacca |
24188982 |
T |
|
| Q |
201 |
aaactacctcccttcccgtcgtcattttcttccacggtggtggcttcacttttctctcttcttcctcgaacctctacgatgcggtttgtcgtagactctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24188983 |
aaactacctcccttcccgtcgtcattttcttccacggtggtggcttcacttttctttcttcttcctcaaacctctacgatgcggtttgtcgtagactctg |
24189082 |
T |
|
| Q |
301 |
ccgggaaatctccgctgtcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24189083 |
ccgggaaatctccgctgtcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattc |
24189182 |
T |
|
| Q |
401 |
cttgacgagaacgtaacagttttaccggcaaatactgatgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggcacaccatgttgcgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
24189183 |
cttgacgagaacgtaacagttttaccggaaaatactgacgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggtacaccatgttgcgg |
24189282 |
T |
|
| Q |
501 |
ttagggcatgcaaag |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24189283 |
ttagggcatgcaaag |
24189297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 24178977 - 24179490
Alignment:
| Q |
1 |
aacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24178977 |
aacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtt |
24179076 |
T |
|
| Q |
101 |
tccacaaaagacgttaccgttaactccgaaaacaacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccacca |
200 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||| ||||||| ||||||||||| || |||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
24179077 |
tccaccaaagacgttaccgttaacgccgaaaataacgtttggtttcgtctctttacccccactgttgccggagaagtcaccggagatggtggtgccacca |
24179176 |
T |
|
| Q |
201 |
aaactacctcccttcccgtcgtcattttcttccacggtggtggcttcacttttctctcttcttcctcgaacctctacgatgcggtttgtcgtagactctg |
300 |
Q |
| |
|
|| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
24179177 |
aagcaacctcccttcctgtcgtcattttcttccacggcggtggctacacttttctttctccttcctcgaacctctacgacgctgtttgccgtagactctg |
24179276 |
T |
|
| Q |
301 |
ccgggaaatctccgctgtcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24179277 |
ccgggaaatctccgctgtcattgtctccgtcaactaccgacttacaccagagcatcggtatccgtcacaatatgaagacggagaagcagtactgagattc |
24179376 |
T |
|
| Q |
401 |
cttgacgagaacgtaacagttttaccggcaaatactgatgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggcacaccatgttgcgg |
500 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
24179377 |
cttgacgagaacgtaaccgttttaccggcaaatgctgacctgtcaaaatgtttcctagcaggagatagtgccggtggaaatttggcacacgatgttgtgg |
24179476 |
T |
|
| Q |
501 |
ttagggcatgcaaa |
514 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24179477 |
ttagggcatgcaaa |
24179490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 33 - 506
Target Start/End: Original strand, 24168573 - 24169046
Alignment:
| Q |
33 |
tcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaa |
132 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||| ||||| |||||||| ||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
24168573 |
tcaaccgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaa |
24168672 |
T |
|
| Q |
133 |
caacctttggttccgtctctttactccaactgttgccggagaagtcaccgaagatggtggttccaccaaaactacctcccttcccgtcgtcattttcttc |
232 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||| |||||||||| || |||||||||| | |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
24168673 |
taacgtttggttccgtctctttacacccactgttggcggagaagtcgtcggagatggtggtgcaaccaaaacaacctcccttcccgttgtcattttcttc |
24168772 |
T |
|
| Q |
233 |
cacggtggtggcttcacttttctctcttcttcctcgaacctctacgatgcggtttgtcgtagactctgccgggaaatctccgctgtcattgtctccgtca |
332 |
Q |
| |
|
||||||||||||||||| | ||| | | ||||| | | ||| ||||| |||| |||||||||||||||||||| |||| ||| ||||||| |||| |
|
|
| T |
24168773 |
cacggtggtggcttcacctatctttgcccctcctctatctactatgatgctttttgccgtagactctgccgggaaatatccgttgttgttgtctctgtca |
24168872 |
T |
|
| Q |
333 |
actaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattccttgacgagaacgtaacagttttaccggcaaa |
432 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||| |||||||||||||| || ||| || | || ||||| || |||||||||| ||| |
|
|
| T |
24168873 |
actaccgcctcacaccggagcattgctatccgtcgcaatacgaagacggagaagctgttttgaaatatttggaggagaataaaatggttttaccggaaaa |
24168972 |
T |
|
| Q |
433 |
tactgatgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggcacaccatgttgcggttaggg |
506 |
Q |
| |
|
| |||| ||||||||||||||||| |||||||| || ||||||| |||||||||||| || |||| ||||||| |
|
|
| T |
24168973 |
tgctgacgtgtcaaaatgtttcctcgccggagacagtgccggtgcaaatttggcacatcaccttgcagttaggg |
24169046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 21 - 506
Target Start/End: Original strand, 24151722 - 24152219
Alignment:
| Q |
21 |
ctaacggtaccgtcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgt |
120 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
24151722 |
ctaacggcaccgtcaaccgccgtctctttaacttcttcagtctcaatgcctcacctaactccactcccgttaacggcgtttccaccaaagacattaccgt |
24151821 |
T |
|
| Q |
121 |
taactccgaaaacaacctttggttccgtctctttactccaac------------tgttgccggagaagtcaccgaagatggtggttccaccaaaactacc |
208 |
Q |
| |
|
|||| ||||||| ||| ||||||| |||||||| ||||| || ||||||||||| || || | |||||||||| |||| ||||| ||| |
|
|
| T |
24151822 |
taacaccgaaaataacgtttggtttcgtctcttcactcccaccgtcgccggagaagttgccggagaggttactggagatggtggtgccactaaaacaacc |
24151921 |
T |
|
| Q |
209 |
tcccttcccgtcgtcattttcttccacggtggtggcttcacttttctctcttcttcctcgaacctct-acgatgcggtttgtcgtagactctgccgggaa |
307 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||||||||||| |||||| || | ||||| || || | ||||||| | || |||||||||||| ||||| |
|
|
| T |
24151922 |
tcccttcctgtcatcatttacttccacggtggtggcttcagttttctttccccctcctc-aatctatcacgatgctttatgccgtagactctgcagggaa |
24152020 |
T |
|
| Q |
308 |
atctccgctgtcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattccttgacg |
407 |
Q |
| |
|
| | |||||| | ||||| ||||||||||| ||| |||| |||||| | ||||||||||||||||| || ||||| || || |||| ||| | || | |
|
|
| T |
24152021 |
gttttcgctgttgtcgtctctgtcaactaccgccttacaccggagcatagatatccgtcgcaatatgatgatggagaggctgtgctgaaatttttggaag |
24152120 |
T |
|
| Q |
408 |
agaacgtaacagttttaccggcaaatactgatgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggcacaccatgttgcggttaggg |
506 |
Q |
| |
|
|||| ||| |||||||||| |||| |||| ||||||||||||||||| |||||||| || | |||| |||||| ||||||||| || | ||||||| |
|
|
| T |
24152121 |
agaataaaacggttttaccggaaaatgctgacgtgtcaaaatgtttccttgccggagacagttctggtgcaaatttagcacaccatcttacagttaggg |
24152219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 502
Target Start/End: Original strand, 24112700 - 24112927
Alignment:
| Q |
275 |
tacgatgcggtttgtcgtagactctgccgggaaatctccgctgtcattgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatg |
374 |
Q |
| |
|
|||||||| ||||| || ||| |||||||| ||||| ||||| | ||||||||||||||||| | |||| |||||||| ||||| |||||||| | |
|
|
| T |
24112700 |
tacgatgctgtttgccggagattctgccggaaaatcaatgctgttgtcgtctccgtcaactaccgtcacacaccggagcatcggtatccatcgcaatacg |
24112799 |
T |
|
| Q |
375 |
aagacggagaagcagtactgagattccttgacgagaacgtaacagttttaccggcaaatactgatgtgtcaaaatgtttcctagccggagatagcgccgg |
474 |
Q |
| |
|
||||||||||||| || ||| || | |||||||| ||| |||||||||| |||| |||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
24112800 |
aagacggagaagctgttttgaaatatttggacgagaataaaacggttttaccggaaaatgctgacgtgtcaaaatgtttcctcgccggagacagtgccgg |
24112899 |
T |
|
| Q |
475 |
tggaaatttggcacaccatgttgcggtt |
502 |
Q |
| |
|
|| |||||| ||||| |||||||||||| |
|
|
| T |
24112900 |
tgcaaatttagcacatcatgttgcggtt |
24112927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 321 - 515
Target Start/End: Original strand, 24107621 - 24107815
Alignment:
| Q |
321 |
ttgtctccgtcaactaccgacttgcaccagagcatcgctatccgtcgcaatatgaagacggagaagcagtactgagattccttgacgagaacgtaacagt |
420 |
Q |
| |
|
||||||||||||||||||| | |||| ||| |||| || ||| | ||||| ||||| |||||| | | | ||| |||||||||||| ||| | | || |
|
|
| T |
24107621 |
ttgtctccgtcaactaccgccgcacaccggagtatcgttacccgacacaatacgaagatggagaaaccgcattgaaattccttgacgaaaacaaatccgt |
24107720 |
T |
|
| Q |
421 |
tttaccggcaaatactgatgtgtcaaaatgtttcctagccggagatagcgccggtggaaatttggcacaccatgttgcggttagggcatgcaaag |
515 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
24107721 |
tttaccggaaaatgttgatgtgtcaaaatgtttcctagctggagacagcgcgggtgcaaatttggcacatcatgttgcggttcgggcttgcaaag |
24107815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 24112443 - 24112575
Alignment:
| Q |
21 |
ctaacggtaccgtcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgt |
120 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||| ||||| |||| |||||| || |||||||||| || |||||||||||||||| |||||||||| ||| |
|
|
| T |
24112443 |
ctaacggcaccgttaaccgccgttttcttaatttcttagatcgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgttatcgt |
24112542 |
T |
|
| Q |
121 |
taactccgaaaacaacctttggttccgtctctt |
153 |
Q |
| |
|
|||| | ||| | ||| |||||||||||||||| |
|
|
| T |
24112543 |
taacgcagaagataacgtttggttccgtctctt |
24112575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 24107301 - 24107459
Alignment:
| Q |
1 |
aacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctccttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtt |
100 |
Q |
| |
|
|||||||||| |||||||| |||| |||| || ||||||||||| || ||||| || ||| |||| | || |||| || ||||| |||||||| ||| |
|
|
| T |
24107301 |
aacggacgctgcatgtcgatctaatggtagtgttaaccgccgtcttctcaactttttagataacaaaacatcggctaaagcaactcccattaacggtgtt |
24107400 |
T |
|
| Q |
101 |
tccacaaaagacgttaccgttaactccgaaaacaacctttggttccgtctctttactcc |
159 |
Q |
| |
|
|||||||||||| | || ||| | |||||| || |||||||||||||||| ||||| |
|
|
| T |
24107401 |
tccacaaaagacataactgttgatgccgaaagtaaaatttggttccgtctcttcactcc |
24107459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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