View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8740_high_5 (Length: 371)
Name: NF8740_high_5
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 22569657 - 22569315
Alignment:
| Q |
18 |
attataagaagactttagtgagttatgcaactaagtacctaaccaacaataataccgttaattagttagttgaactcccatatcatatatattacaaagg |
117 |
Q |
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| T |
22569657 |
attataagaagactttagtgagttatgcaactaagtacctaaccaacaagaataccgttaattagttagttgaactcccatatcatatatattacaaagg |
22569558 |
T |
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| Q |
118 |
gtttactcaagttacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacctgcatcagattctcc |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22569557 |
gtttactcaagtcacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacctgcaccagattctcc |
22569458 |
T |
|
| Q |
218 |
aacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccaccgccacagcaacaaccacgtgactct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22569457 |
aacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccactgccacagcaacaaccacgtgactct |
22569358 |
T |
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| Q |
318 |
cctcagcagaaaatacaatctgcacaatactcaccagaataat |
360 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22569357 |
cctcagcagaaaatacaatctgcacaaaactcaccagaataat |
22569315 |
T |
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