View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8740_low_3 (Length: 486)
Name: NF8740_low_3
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14257797 - 14258060
Alignment:
| Q |
1 |
tgaattttcacttcaacaattttactcacctctaaagaataggagctagttatatatatcaaacttgatgctattgattaactttatgcttcgtattaaa |
100 |
Q |
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| T |
14257797 |
tgaattttcacttcaacaattttactcacctctaaagaataggagctagttatatatatcaaacttgatgctattgattaactttatgcttcgtattaaa |
14257896 |
T |
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| Q |
101 |
tccacaacaataaaagttaattgaaaataataggagctagttaactagcgtaaggtagtgaattgtaccctgctcgaaaggtgtctgttttataatcatt |
200 |
Q |
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| T |
14257897 |
tccacaacaataaaagttaattgaaaataataggagctagttaactagcgtaaggtagtgaattgtaccctgctcgaaaggtgtctgttttataatcatt |
14257996 |
T |
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| Q |
201 |
actaacaatggcatcataacagtatagtgttttcaaagttgcctgcataaaaagttatatatga |
264 |
Q |
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| T |
14257997 |
actaacaatggcatcataacagtatagtgttttcaaagttgcctgcataaaaagttatatatga |
14258060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 293 - 469
Target Start/End: Original strand, 14258058 - 14258234
Alignment:
| Q |
293 |
tgaatgagagtagattaaatcctcaatttaggcccttatgtatcatttctctcctacctagatactatatttctatagtatatgacgagaaaaatctata |
392 |
Q |
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| T |
14258058 |
tgaatgagagtagattaaatcctcaatttaggcccttatgtatcatttctctcctacctagatactatatttctatagtatatgacgagaaaaatctata |
14258157 |
T |
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| Q |
393 |
aggagtttttacagaaggaaaatatataagatatcactgatatcttgttaagtataaaacactaaagactactaatt |
469 |
Q |
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| T |
14258158 |
aggagtttttacagaaggaaaatatataagatatcactgatatcttgttaagtataaaacactaaagactactaatt |
14258234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 73 - 326
Target Start/End: Original strand, 14277713 - 14277968
Alignment:
| Q |
73 |
attgattaactttatgcttcgtattaaatccacaacaataaaagttaattgaaaataataggagctagttaactagcgtaaggtagtgaattgtaccctg |
172 |
Q |
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||||||| | |||||| ||| ||||||||| |||||||||||| |||||| | |||||||||| |||||||| | | || ||||||||| |||||| || |
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| T |
14277713 |
attgatttattttatgattcatattaaatcaacaacaataaaatttaattcagaataataggaactagttaatcatcatatggtagtgaagtgtaccttg |
14277812 |
T |
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| Q |
173 |
ctcgaaaggtgtctgttttataatcattactaacaatggcatcataacagtatagtgttttcaaagttgcctgcataaaaagttatatatgattaaatct |
272 |
Q |
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| T |
14277813 |
ctcgaaaggtatctgttttagaatcatagctaacgatggcgtcataacagtataatatttgcaatgttgcctgcataaaaagttatatgtgattaaa-ct |
14277911 |
T |
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| Q |
273 |
a---ttaaattaacggataaatgtgaatgagagtagattaaatcctcaatttaggcc |
326 |
Q |
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| T |
14277912 |
aattttaaatcaaatgataatagtgaatgagagtatattaaacccataatttaggcc |
14277968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 35131065 - 35131177
Alignment:
| Q |
157 |
agtgaattgtaccctgctcgaaaggtgtctgttttataatcattactaacaatggcatcataacagtatagtgttttcaaagttgcctgcataaaaagtt |
256 |
Q |
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| T |
35131065 |
agtgaattttaccttgtttgaaaggtgtctgttctagaatcataactaacaatggcatcataacagtgtaatgttaacaatgtcgcctgcatgaaaagtt |
35131164 |
T |
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| Q |
257 |
atatatgattaaa |
269 |
Q |
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| T |
35131165 |
ctatatgattaaa |
35131177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 35138291 - 35138485
Alignment:
| Q |
74 |
ttgattaactttatgcttcgtattaaatccacaacaataaaagttaattgaaaataataggagctagttaacta---gcgtaaggtagtgaattgtaccc |
170 |
Q |
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| T |
35138291 |
ttgattaaatttatgtttcatattaaatccacaacaagaaaaattaagagcaa----taggagcttgttaattattagtataagggagtgaattgtacct |
35138386 |
T |
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| Q |
171 |
tgctcgaaaggtgtctgttttataatcattactaacaatggcatcataacagtatagtgttttcaaagttgcctgcataaaaagttatatatgattaaa |
269 |
Q |
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| T |
35138387 |
cgtttgaaaggtgtttgttttagaatcataagtaacaatggcatcataacagtataatgttaacagtgtagcctgcatgaaaagttctatatgattaaa |
35138485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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