View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8740_low_4 (Length: 440)
Name: NF8740_low_4
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 27776657 - 27776244
Alignment:
| Q |
18 |
gaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776657 |
gaaaaggtgttcaagatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaag |
27776558 |
T |
|
| Q |
118 |
tagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27776557 |
tagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgt |
27776458 |
T |
|
| Q |
218 |
aacactgctgtttggtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27776457 |
aacactgctgtttggtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgagcttcatgaatttcctgttgatgtttcaaaat |
27776358 |
T |
|
| Q |
318 |
gatgttagtaacctacttgggctgacatgatcatattgtcttgggacctgaaaatgtgctcctcctcaagatttctgattcaattcaccctgatgt-agt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||| ||| |
|
|
| T |
27776357 |
gatgttagtaacctacttgggctgacatgatcatattgtcttgggacctgaaagtgtgctcctcctcaaagtttctggttcgattcaccctgatgtcagt |
27776258 |
T |
|
| Q |
417 |
ttgagtggtctctg |
430 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
27776257 |
ttgagtggtttctg |
27776244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 256
Target Start/End: Original strand, 10279956 - 10280138
Alignment:
| Q |
74 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||| ||| ||||||||||||||||||| || | | || | |
|
|
| T |
10279956 |
gagccttcaagaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
10280055 |
T |
|
| Q |
174 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
256 |
Q |
| |
|
| ||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
10280056 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
10280138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 19743004 - 19742722
Alignment:
| Q |
32 |
gatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggt |
131 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||| ||| | |||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
19743004 |
gatgagattcaaaaagtgctggggttaagtgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggt |
19742905 |
T |
|
| Q |
132 |
atgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttg |
231 |
Q |
| |
|
||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19742904 |
atgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttg |
19742805 |
T |
|
| Q |
232 |
gtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
314 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
19742804 |
gtgtgcattaaggaatgttgatccaattaaagagatcaatccttggagtgatgagataaatgagtttcctgttgatgtttcaa |
19742722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 32 - 314
Target Start/End: Original strand, 19797084 - 19797366
Alignment:
| Q |
32 |
gatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggt |
131 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||| ||| | |||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
19797084 |
gatgagattcaaaaagtgctggggttaagtgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggt |
19797183 |
T |
|
| Q |
132 |
atgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttg |
231 |
Q |
| |
|
||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19797184 |
atgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttg |
19797283 |
T |
|
| Q |
232 |
gtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
314 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
19797284 |
gtgtgcattaaggaatgttgatccaattaaagagatcaatccttggagtgatgagataaatgagtttcctgttgatgtttcaa |
19797366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 19539961 - 19539679
Alignment:
| Q |
32 |
gatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggt |
131 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| | |||||||||| |||||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
19539961 |
gatgagatacaaaaagtgctaggattaagtgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggt |
19539862 |
T |
|
| Q |
132 |
atgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttg |
231 |
Q |
| |
|
||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
19539861 |
atgagttggcatattgtgaagctaaaggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttg |
19539762 |
T |
|
| Q |
232 |
gtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
314 |
Q |
| |
|
|||||| |||| |||||||||||| |||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
19539761 |
gtgtgcattaaagaatgttgatccaattaaagagatcaatccttggagtgatgagataagtgagtttcctgttgatgtttcaa |
19539679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 19671884 - 19671602
Alignment:
| Q |
32 |
gatgagatacaaaaagtgcttggattaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggt |
131 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||| | |||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
19671884 |
gatgagatacaaaaagtgctagggttaagtgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggt |
19671785 |
T |
|
| Q |
132 |
atgttttggcttattgtgaagctaagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttg |
231 |
Q |
| |
|
||| ||||| |||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
19671784 |
atgagttggcatattgtgaagctaaaggaagagtatgaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttg |
19671685 |
T |
|
| Q |
232 |
gtgtgctttaaggaatgttgatcctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
314 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |||||||||||||||||| | ||| |||||| |||||||||||| |
|
|
| T |
19671684 |
gtgtgcattaaggaatgttgatccaattaaagagatcaatccttggagtgatgagataagtgagtttcctcttgatgtttcaa |
19671602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 59 - 309
Target Start/End: Original strand, 34053231 - 34053481
Alignment:
| Q |
59 |
agtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagg |
158 |
Q |
| |
|
||||||||||| || || || |||||||||||||| |||||| ||| |||||||| |||||||| | ||||||| ||||||||| ||||||||| | |
|
|
| T |
34053231 |
agtgattggcatatggaaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaag |
34053330 |
T |
|
| Q |
159 |
gaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctgt |
258 |
Q |
| |
|
| ||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| || |||| |||||||| | |
|
|
| T |
34053331 |
ggaggattagaaaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagc |
34053430 |
T |
|
| Q |
259 |
taaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgt |
309 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||||| ||||||||| |||| |
|
|
| T |
34053431 |
taaggagaaaaatccatggatggatgagattcatgagtttcctgttcatgt |
34053481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 15239529 - 15239782
Alignment:
| Q |
56 |
ttaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagcta |
155 |
Q |
| |
|
|||||||||||||| || || || ||||| |||||||| |||||| ||| || ||||| |||||||| | ||||||| ||||||||| |||||||| |
|
|
| T |
15239529 |
ttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactgaagcta |
15239628 |
T |
|
| Q |
156 |
agggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcc |
255 |
Q |
| |
|
| || ||||| | ||||||||||| | |||||||||||||||||| ||||| ||||| ||||| | |||||||||| || || | || | || |||| |
|
|
| T |
15239629 |
aagggaggattaaaaaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttggaaagcattgaagactattaatcc |
15239728 |
T |
|
| Q |
256 |
tgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgt |
309 |
Q |
| |
|
|| ||||||| |||||||||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
15239729 |
tgcaaaggagaagaatccttggattgatgagattcatgagtttcctgttcatgt |
15239782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 23499244 - 23499099
Alignment:
| Q |
65 |
tggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaagga |
164 |
Q |
| |
|
||||| || ||||| |||||||||||||||||| | | |||||| || || || ||||| ||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
23499244 |
tggcatatggagccgtcaagaatgacactttatcgttttggaaacacctcgagcagttcgctttggtacgaattggcttacacggaagccaagggaagga |
23499145 |
T |
|
| Q |
165 |
taaggaaaggtgataggatttggcaaattgcatttgggtctggatt |
210 |
Q |
| |
|
| | |||||| ||||| | |||||||| |||||||| || ||||| |
|
|
| T |
23499144 |
tcaagaaaggagatagaacatggcaaatagcatttggttcaggatt |
23499099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 27445001 - 27445061
Alignment:
| Q |
332 |
acttgggctgacatgatcatattgtcttgggacctgaaaatgtgctcctcctcaagatttc |
392 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||| || | |||||||||||||||| |||| |
|
|
| T |
27445001 |
acttgggttgacatgatggtattgacttgggaccagagagtgtgctcctcctcaaggtttc |
27445061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University