View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8740_low_7 (Length: 273)
Name: NF8740_low_7
Description: NF8740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8740_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 5233264 - 5233023
Alignment:
| Q |
22 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagattnnnnnnnnnnn |
121 |
Q |
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| T |
5233264 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaaaaa |
5233165 |
T |
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| Q |
122 |
nnn---ttactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgt |
218 |
Q |
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| T |
5233164 |
aaaaaattactctcataatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgt |
5233065 |
T |
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| Q |
219 |
cctgcattttggattagtaaaagttccagcataattacattc |
260 |
Q |
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| T |
5233064 |
cctgcattttggattagtaaaagttccagcataattacattc |
5233023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 17129047 - 17128938
Alignment:
| Q |
145 |
tacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttc |
244 |
Q |
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||||||||||||| |||||||||| || |||||| ||||||||||| ||||| |||| |||||||||||| ||||||||| || || ||||||| |
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| T |
17129047 |
tacttacatcattgttgtaaagtaaa---ttgtatgaattcttaccatttttgtgtgggttgtccacaatttgttctgcattttttatctgtgaaagttc |
17128951 |
T |
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| Q |
245 |
cagcataattaca |
257 |
Q |
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| T |
17128950 |
cggcataattaca |
17128938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 17129161 - 17129075
Alignment:
| Q |
22 |
agggtcacctccccattcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaaga |
108 |
Q |
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|||||| |||||||||||||| | ||||||||||||||||| || | ||| |||||| ||||||||||||||||| || ||||| |
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| T |
17129161 |
agggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttcagccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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