View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8741_high_11 (Length: 266)

Name: NF8741_high_11
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8741_high_11
NF8741_high_11
[»] chr4 (2 HSPs)
chr4 (138-254)||(21128969-21129085)
chr4 (140-254)||(21134879-21134993)
[»] chr2 (3 HSPs)
chr2 (140-254)||(9035396-9035510)
chr2 (143-254)||(9039845-9039956)
chr2 (141-254)||(36598984-36599097)
[»] scaffold0019 (1 HSPs)
scaffold0019 (44-141)||(1551-1648)
[»] chr3 (7 HSPs)
chr3 (39-141)||(750735-750837)
chr3 (39-124)||(2642445-2642530)
chr3 (37-141)||(2632934-2633034)
chr3 (87-141)||(667900-667954)
chr3 (37-124)||(2494899-2494986)
chr3 (40-124)||(2649967-2650051)
chr3 (42-106)||(9564581-9564645)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 21128969 - 21129085
Alignment:
Q  138 atatattagaggataattatcatgtagagaatatctcctatagttattgtttagatagcaacaaatcatatagttgacttatgacaatcaattgtcattc 237  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21128969 atatattagaggataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattc 21129068  T
Q  238 atagtcattacagtata 254  Q
     ||||||||||||||||    
T  21129069 ttagtcattacagtata 21129085  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 21134879 - 21134993
Alignment:
Q  140 atattagaggataattatcatgtagagaatatctcctatagttattgtttagatagcaacaaatcatatagttgacttatgacaatcaattgtcattcat 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21134879 atattagaggataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattctt 21134978  T
Q  240 agtcattacagtata 254  Q
    |||||||||||||||    
T  21134979 agtcattacagtata 21134993  T

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Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 9035510 - 9035396
Alignment:
Q  140 atattagaggataattatcatgtagagaatatctcctatagttattgtttagatagcaacaaatcatatagttgacttatgacaatcaattgtcattcat 239  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |    
T  9035510 atattagaggataattatcatgtagagaatatctcctgtagttattgtttagatagcaacaaattatatagttgactcatgacaatcaattgtcattctt 9035411  T
Q  240 agtcattacagtata 254  Q
    |||||||||||||||    
T  9035410 agtcattacagtata 9035396  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 9039956 - 9039845
Alignment:
Q  143 ttagaggataattatcatgtagagaatatctcctatagttattgtttagatagcaacaaatcatatagttgacttatgacaatcaattgtcattcatagt 242  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  9039956 ttagaggataattatcatgtggagaatatctcctgtagttattgtttagatagcaacaaatcatatagttgactcatgacaatcaattgtcattcttagt 9039857  T
Q  243 cattacagtata 254  Q
    ||||||||||||    
T  9039856 cattacagtata 9039845  T

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Target: chr2; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 36598984 - 36599097
Alignment:
Q  141 tattagaggataattatcatgtagagaatatctcctatagttattgtttagatagcaacaaatcatatagttgacttatgacaatcaattgtcattcata 240  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  36598984 tattagaggataattatcatgcagaaaatatctcctatagttattgtttagatagcaacaaattatagagttgacttatgacaatcaattgtcattcata 36599083  T
Q  241 gtcattacagtata 254  Q
    ||||||||| ||||    
T  36599084 gtcattacaatata 36599097  T

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Target: scaffold0019 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 1648 - 1551
Alignment:
Q  44 aacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaaaactgaatgtactatat 141  Q
    ||||||| ||||||||||| |||||||||||| || | ||||||||||||||| ||||||||||  ||||| ||||||||||  |||||||| |||||    
T  1648 aacagaaaccaaaatgtttcaaataataattagcaccaaaaccaactgagtggtaatggtaaccattaattgaaaactgaaatttgaatgtattatat 1551  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 750735 - 750837
Alignment:
Q  39 gtcaaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaaaactgaatgtacta 138  Q
    |||||||||||| |||||||||||  ||||||||||| |||| ||||||||||||||| ||||||||||  ||||| ||||   |||||| ||||||| |    
T  750735 gtcaaaacagaaaccaaaatgtttcgaataataattaccatcaaaaccaactgagtggtaatggtaaccgttaattcaaaatataaaacttaatgtacaa 750834  T
Q  139 tat 141  Q
    |||    
T  750835 tat 750837  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 2642445 - 2642530
Alignment:
Q  39 gtcaaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaa 124  Q
    |||||||||||| ||||||||||| |||||||||||| |||| |||| |||  ||||| ||||||||||| | ||| |||||||||    
T  2642445 gtcaaaacagaaaccaaaatgtttgaaataataattaccatcaaaacaaacatagtgggaatggtaaccctttattgaaaactgaa 2642530  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 2633034 - 2632934
Alignment:
Q  37 atgtcaaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaaaactgaatgtac 136  Q
    |||||||||  ||| |||| |||||| |||||||||||| | || |||||    |||||| ||| ||||||||||||| |||||| ||||||||||||||    
T  2633034 atgtcaaaatggaaaccaacatgtttcaaataataattaccgtcaaaacc----gagtggtaatcgtaacccataattcaaaacttaaaactgaatgtac 2632939  T
Q  137 tatat 141  Q
     ||||    
T  2632938 aatat 2632934  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 667900 - 667954
Alignment:
Q  87 aactgagtggcaatggtaacccataatttaaaactgaaaactgaatgtactatat 141  Q
    |||||||||| |||||||||||||||||  |||||||||| ||||||| ||||||    
T  667900 aactgagtggtaatggtaacccataattggaaactgaaaaatgaatgtcctatat 667954  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 2494986 - 2494899
Alignment:
Q  37 atgtcaaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaa 124  Q
    ||||||||||| || |||||| |||| ||||||||| || || | ||| ||||||| ||| |||||||| || ||||| |||||||||    
T  2494986 atgtcaaaacataaaccaaaaagtttcaaataataagtaccaccaaaatcaactgactggtaatggtaaaccgtaattgaaaactgaa 2494899  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 2649967 - 2650051
Alignment:
Q  40 tcaaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaacccataatttaaaactgaa 124  Q
    ||||||||||| |||||||||||  ||| ||||||| | || |||| |||  ||||| ||||||||||| ||||| || ||||||    
T  2649967 tcaaaacagaaaccaaaatgtttgcaattataattaccctcaaaacaaacatagtgggaatggtaacccttaattgaacactgaa 2650051  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 9564581 - 9564645
Alignment:
Q  42 aaaacagaacccaaaatgttttaaataataattatcatctaaaccaactgagtggcaatggtaac 106  Q
    ||||||||| ||||||||||| |||||| || || |||| ||||||| |||||||  ||||||||    
T  9564581 aaaacagaaaccaaaatgtttcaaataaaaaataccatcaaaaccaattgagtggtgatggtaac 9564645  T

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