View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_high_12 (Length: 259)
Name: NF8741_high_12
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 1718941 - 1718694
Alignment:
| Q |
4 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
103 |
Q |
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| T |
1718941 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
1718842 |
T |
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| Q |
104 |
atggcaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagataggaagttatcaattttgttgaa |
203 |
Q |
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| T |
1718841 |
atggaaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagattggaagttatcaattttgttgaa |
1718742 |
T |
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| Q |
204 |
ctttgtttgcttttcaggagcattggaattcatacataactgatgatg |
251 |
Q |
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| T |
1718741 |
ctttgtttgctttgcaggagcattggaattcgtacataactgaagatg |
1718694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 1740279 - 1740032
Alignment:
| Q |
4 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggtt |
103 |
Q |
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| T |
1740279 |
gcagattatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaaatgtaaacacattacaaggagagtaccaacttactaatggtt |
1740180 |
T |
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| Q |
104 |
atggcaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagataggaagttatcaattttgttgaa |
203 |
Q |
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| T |
1740179 |
atggaaatagagctcctcaagttatgcgagtaagaaatctaagagcattttcatgagaaatagtaaacttgctagattggaagttatcaattttgttgaa |
1740080 |
T |
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| Q |
204 |
ctttgtttgcttttcaggagcattggaattcatacataactgatgatg |
251 |
Q |
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| T |
1740079 |
ctttgtttgctttgcaggagcattggaatttatacataactgaagatg |
1740032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 1750662 - 1750563
Alignment:
| Q |
8 |
attatcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggttatgg |
107 |
Q |
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| T |
1750662 |
attatcaaggcacaaattgggaagaaagtgacccatcagtctttaaaatgacaattgtaagaactttagaaggagagtaccaacttactaatggttatgg |
1750563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 1755723 - 1755628
Alignment:
| Q |
12 |
tcaaggcacaaattgggatgacaatgatccatcagtttttcatatgacaattgtaaacacattacaaggagagtaccaacttactaatggttatgg |
107 |
Q |
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| T |
1755723 |
tcaaggcacaagttgggaagaaagtgacccatcagtatttcgtatgaaaattgtaagaactttagaaggagagtaccaacttactaatggttatgg |
1755628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1750457 - 1750405
Alignment:
| Q |
199 |
ttgaactttgtttgcttttcaggagcattggaattcatacataactgatgatg |
251 |
Q |
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| T |
1750457 |
ttgagctttgtttgctttgcaggagcattggaattcatacataactgaagatg |
1750405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1755521 - 1755469
Alignment:
| Q |
199 |
ttgaactttgtttgcttttcaggagcattggaattcatacataactgatgatg |
251 |
Q |
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| T |
1755521 |
ttgagctttgtttgctttgcaggaccattggaattcttacataactgaagatg |
1755469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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