View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8741_high_9 (Length: 292)

Name: NF8741_high_9
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8741_high_9
NF8741_high_9
[»] chr2 (28 HSPs)
chr2 (1-277)||(16564287-16564563)
chr2 (86-208)||(10459260-10459384)
chr2 (88-208)||(24037576-24037698)
chr2 (89-198)||(31469068-31469179)
chr2 (90-198)||(38935365-38935475)
chr2 (142-208)||(944823-944889)
chr2 (142-196)||(41099030-41099084)
chr2 (134-194)||(43398844-43398904)
chr2 (92-183)||(7932743-7932836)
chr2 (85-196)||(41374533-41374646)
chr2 (98-198)||(16180437-16180539)
chr2 (137-208)||(43042213-43042284)
chr2 (142-208)||(4445856-4445922)
chr2 (90-184)||(2884254-2884350)
chr2 (142-185)||(1862670-1862713)
chr2 (146-208)||(14781966-14782028)
chr2 (86-160)||(17437166-17437242)
chr2 (134-195)||(35311190-35311250)
chr2 (136-180)||(19924350-19924394)
chr2 (142-198)||(25089917-25089973)
chr2 (134-178)||(40823551-40823595)
chr2 (146-208)||(10459258-10459320)
chr2 (142-195)||(11386361-11386414)
chr2 (90-183)||(41912094-41912190)
chr2 (160-209)||(42266029-42266078)
chr2 (85-113)||(22162236-22162264)
chr2 (154-194)||(24037648-24037688)
chr2 (108-205)||(35693934-35694033)
[»] chr5 (21 HSPs)
chr5 (89-208)||(39030560-39030681)
chr5 (90-208)||(33669919-33670039)
chr5 (86-208)||(34252711-34252835)
chr5 (90-195)||(5727714-5727820)
chr5 (86-208)||(9956490-9956614)
chr5 (88-172)||(33498357-33498443)
chr5 (93-195)||(12619626-12619724)
chr5 (134-199)||(20185314-20185379)
chr5 (134-194)||(9530957-9531017)
chr5 (141-208)||(34252709-34252776)
chr5 (97-175)||(504129-504207)
chr5 (142-195)||(968287-968340)
chr5 (142-195)||(30293428-30293481)
chr5 (134-194)||(2424444-2424504)
chr5 (98-175)||(42324905-42324984)
chr5 (136-195)||(17555949-17556008)
chr5 (134-208)||(37040147-37040220)
chr5 (88-175)||(38958057-38958146)
chr5 (138-195)||(17234538-17234594)
chr5 (151-208)||(33669988-33670045)
chr5 (98-171)||(19644427-19644502)
[»] chr1 (16 HSPs)
chr1 (89-208)||(19758262-19758384)
chr1 (89-208)||(3739806-3739927)
chr1 (134-198)||(37918916-37918980)
chr1 (87-217)||(30693330-30693462)
chr1 (86-208)||(47543593-47543717)
chr1 (87-180)||(5056314-5056409)
chr1 (98-196)||(3693991-3694091)
chr1 (134-196)||(26265783-26265845)
chr1 (134-198)||(5693576-5693640)
chr1 (142-198)||(31784787-31784843)
chr1 (86-194)||(3739808-3739918)
chr1 (106-198)||(6061462-6061556)
chr1 (150-193)||(50381198-50381241)
chr1 (157-194)||(42711885-42711922)
chr1 (134-198)||(27527707-27527771)
chr1 (134-194)||(29855102-29855162)
[»] chr6 (14 HSPs)
chr6 (134-208)||(30531222-30531296)
chr6 (98-198)||(31323820-31323922)
chr6 (90-194)||(35003757-35003863)
chr6 (91-194)||(1986203-1986308)
chr6 (99-176)||(9829898-9829977)
chr6 (146-197)||(30531181-30531232)
chr6 (142-208)||(9675754-9675820)
chr6 (142-196)||(14222845-14222899)
chr6 (134-194)||(1937689-1937749)
chr6 (135-183)||(24547189-24547237)
chr6 (134-195)||(13320854-13320915)
chr6 (142-195)||(33822340-33822393)
chr6 (142-198)||(2282450-2282506)
chr6 (86-195)||(31522613-31522723)
[»] chr8 (8 HSPs)
chr8 (90-196)||(35901039-35901147)
chr8 (97-198)||(9548052-9548154)
chr8 (135-196)||(29797944-29798005)
chr8 (138-198)||(11114284-11114344)
chr8 (153-198)||(32729727-32729772)
chr8 (142-194)||(37627916-37627968)
chr8 (134-175)||(13210008-13210049)
chr8 (142-194)||(33557781-33557833)
[»] chr7 (15 HSPs)
chr7 (93-208)||(6803308-6803425)
chr7 (90-198)||(18731992-18732101)
chr7 (138-196)||(3769757-3769815)
chr7 (102-208)||(16866393-16866501)
chr7 (96-194)||(23971191-23971290)
chr7 (134-195)||(32652411-32652472)
chr7 (134-195)||(44816511-44816572)
chr7 (90-183)||(47967911-47968006)
chr7 (89-195)||(3719874-3719982)
chr7 (138-194)||(27147603-27147659)
chr7 (136-195)||(14773517-14773576)
chr7 (136-195)||(15223969-15224028)
chr7 (86-119)||(1554918-1554951)
chr7 (100-182)||(4259324-4259408)
chr7 (142-170)||(5026192-5026220)
[»] chr4 (12 HSPs)
chr4 (86-195)||(54235227-54235338)
chr4 (88-208)||(12276816-12276938)
chr4 (90-198)||(30848592-30848704)
chr4 (142-198)||(4423201-4423257)
chr4 (134-194)||(5496857-5496917)
chr4 (143-198)||(51714236-51714291)
chr4 (151-208)||(2734171-2734228)
chr4 (98-194)||(24980631-24980729)
chr4 (142-199)||(2871550-2871607)
chr4 (138-195)||(13777136-13777193)
chr4 (143-196)||(37783907-37783960)
chr4 (86-114)||(38940748-38940776)
[»] scaffold0067 (1 HSPs)
scaffold0067 (90-198)||(35938-36048)
[»] chr3 (15 HSPs)
chr3 (98-198)||(32221472-32221574)
chr3 (98-198)||(26914452-26914553)
chr3 (96-204)||(31280159-31280269)
chr3 (134-196)||(47783122-47783184)
chr3 (142-194)||(26104270-26104322)
chr3 (136-202)||(37330973-37331039)
chr3 (142-195)||(11256577-11256630)
chr3 (146-195)||(32221526-32221575)
chr3 (134-198)||(15282641-15282705)
chr3 (134-194)||(29637439-29637499)
chr3 (142-194)||(46733069-46733121)
chr3 (90-125)||(46829047-46829082)
chr3 (86-125)||(46829119-46829158)
chr3 (142-196)||(18364220-18364273)
chr3 (106-196)||(5307341-5307433)
[»] scaffold0097 (1 HSPs)
scaffold0097 (134-194)||(37955-38015)
[»] scaffold0034 (1 HSPs)
scaffold0034 (142-194)||(94998-95050)
[»] scaffold0027 (2 HSPs)
scaffold0027 (134-194)||(13218-13278)
scaffold0027 (151-196)||(13178-13223)
[»] scaffold0072 (1 HSPs)
scaffold0072 (97-194)||(20368-20467)
[»] scaffold0009 (1 HSPs)
scaffold0009 (142-196)||(51225-51279)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 16564287 - 16564563
Alignment:
Q  1 taataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaattttttgctaatgtctatttccctccgtcctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  16564287 taataagctttgaattaacatgggaaaaagccaaagggaatgaagctattgttcaccttcactaaactttttgctaatgtctatttccttccgtcctaaa 16564386  T
Q  101 atataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagg 200  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  16564387 atataagcaaaaattggtctacaaacgttagtgtttggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacg 16564486  T
Q  201 gaaggagtgtattgcaagaaacaaacaagttactttgaataaacgcgtgccctatgaagctgacacatactaaccct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16564487 gaaggagtgtattgcaagaaacaaacaagttactttgaataaacgcgtgccctatgaagctgacacatactaaccct 16564563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 10459260 - 10459384
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||| ||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| || || |||||||||||||||||  || |||    
T  10459260 tccctccttcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatcttt 10459359  T
Q  184 gcttacattttgggagggaaggagt 208  Q
    ||||||||||||||| ||| |||||    
T  10459360 gcttacattttgggacggagggagt 10459384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 24037698 - 24037576
Alignment:
Q  88 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 185  Q
    ||||||||||||||  ||||||||||| |||| ||| |  ||  |||  || ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  24037698 cctccgtcctaaaaagtaagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgc 24037599  T
Q  186 ttacattttgggagggaaggagt 208  Q
    ||||||||| ||| ||| |||||    
T  24037598 ttacattttaggacggatggagt 24037576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 31469068 - 31469179
Alignment:
Q  89 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 186  Q
    |||||||| |||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||| ||||||||| |||||  ||||||  |||||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgct 31469167  T
Q  187 tacattttggga 198  Q
    || |||||||||    
T  31469168 tatattttggga 31469179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 38935475 - 38935365
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    ||||||| ||||||||| ||||||||  || |||||  ||| |||  || ||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  38935475 tccgtccaaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgctt 38935376  T
Q  188 acattttggga 198  Q
    | |||||||||    
T  38935375 atattttggga 38935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 944823 - 944889
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| |||||    
T  944823 aaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacggagggagt 944889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 41099030 - 41099084
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttgg 41099084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 43398904 - 43398844
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  43398904 tttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacatttt 43398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 7932743 - 7932836
Alignment:
Q  92 cgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    |||| ||||||||||||||||||| ||| |||||  |||  || ||||||| ||||||| || || ||||||||||||||||||||||||||||    
T  7932743 cgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 41374646 - 41374533
Alignment:
Q  85 ttccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 182  Q
    |||||||||||  |||||||||| ||||||| ||| || ||  ||| |||  ||| || ||| ||| |||||||||||||||||| |||| |||||||||    
T  41374646 ttccctccgtctcaaaatataagtaaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttt 41374547  T
Q  183 tgcttacattttgg 196  Q
    ||||||||||||||    
T  41374546 tgcttacattttgg 41374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 16180539 - 16180437
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||| |||| |||||| |||||  ||| |||  |||||| ||||||| ||   |||||||||| ||||||||||| ||||||||||||||||||    
T  16180539 aaaatataagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttg 16180440  T
Q  196 gga 198  Q
    |||    
T  16180439 gga 16180437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 43042213 - 43042284
Alignment:
Q  137 ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    |||| ||||||| || || |||||||||||| |||| ||||||||||||||||||||||||| ||| |||||    
T  43042213 ggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttgggatggagggagt 43042284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 4445922 - 4445856
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||||||||||||||||||| |||| || ||| ||||||||||| ||||||||| |||| ||||    
T  4445922 aaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttgggatggaaagagt 4445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 2884254 - 2884350
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 184  Q
    |||||||||||||||||| ||||||| ||| ||||| ||||  || ||||||| ||||||| || |||||| || || |||| ||||||||||||||    
T  2884254 tccgtcctaaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaatttatatcaaatatattaaattatattgactcatttttg 2884350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 1862713 - 1862670
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgc 185  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  1862713 aaaatttgtgtcaaatacatcaacttatgttgactcatttttgc 1862670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 14781966 - 14782028
Alignment:
Q  146 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    |||| ||||||||||  |||||||||||||||| |||||||||| |||||||| ||| |||||    
T  14781966 tttgaaccaaatacactaacttatgttgactcaattttgcttacgttttgggacggatggagt 14782028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 17437242 - 17437166
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaataca 160  Q
    ||||||||||| ||||||||| |||||||| ||| ||||| ||||  || ||| ||| |||||||||||||||||||    
T  17437242 tccctccgtcccaaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 35311250 - 35311190
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||||| ||||||||||| | ||| || ||||||||||||| |||||||||||||||||||    
T  35311250 tttggttcaaaatttgtacaagatatat-aacttatgttgacccatttttgcttacattttg 35311190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 19924350 - 19924394
Alignment:
Q  136 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 180  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||    
T  19924350 tggttcaaaatttgtaccaaatacatcaacttacgttgacccatt 19924394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 25089973 - 25089917
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||||||||| |||||||| ||||||||||| |  ||||||| ||||||||||||||    
T  25089973 aaaatttgtatcaaatacaacaacttatgttaatccattttttcttacattttggga 25089917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 40823595 - 40823551
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactca 178  Q
    ||||||||||||||| || |||||||||||| |||||||||||||    
T  40823595 tttggtttaaaatttatatcaaatacatcaaattatgttgactca 40823551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 10459320 - 10459258
Alignment:
Q  146 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    |||| ||||||||||| ||||| |||||||  ||||||||||| ||||||||| ||| |||||    
T  10459320 tttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggagggagt 10459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 11386361 - 11386414
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||| ||||||||||||||||||||||   | ||||||||| ||||||    
T  11386361 aaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 41912190 - 41912094
Alignment:
Q  90 tccgtcctaaaatataagcaaaaa-ttggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||| |||||||||||||||||| ||| || ||||| |||| ||| |  |||| |||||||||||||  || || |||||||||||||| ||||||    
T  41912190 tccgttctaaaatataagcaaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttattttt 41912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 42266029 - 42266078
Alignment:
Q  160 atcaacttatgttgactcatttttgcttacattttgggagggaaggagtg 209  Q
    ||||| ||||| |||  |||||||||||||||||||||| ||||||||||    
T  42266029 atcaatttatggtgatccatttttgcttacattttgggatggaaggagtg 42266078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 22162236 - 22162264
Alignment:
Q  85 ttccctccgtcctaaaatataagcaaaaa 113  Q
    |||||||||||||||||||||||||||||    
T  22162236 ttccctccgtcctaaaatataagcaaaaa 22162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 24037648 - 24037688
Alignment:
Q  154 aaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  24037648 aaatacatcaacttatgtcgacccatttttgcttacttttt 24037688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 35693934 - 35694033
Alignment:
Q  108 caaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaagg 205  Q
    |||||||||||| | ||| |||| |||  ||||||||||||| ||| ||||||||| ||  |||| ||| ||||||| ||||| |||||| || ||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaatctatgatgattcattttcgcttatattttgagacggaagg 35694033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 39030560 - 39030681
Alignment:
Q  89 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 186  Q
    |||||| |||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| ||||| |||||||| |||||||||    
T  39030560 ctccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgct 39030659  T
Q  187 tacattttgggagggaaggagt 208  Q
    || ||||||||| ||| |||||    
T  39030660 tatattttgggatggagggagt 39030681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 33670039 - 33669919
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    ||||||| ||||| |||||||||||||||| | |||  ||| |||  |||||||||||||||||||| |||||  ||||||||||||| |||||||||||    
T  33670039 tccgtcccaaaatgtaagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgctt 33669940  T
Q  188 acattttgggagggaaggagt 208  Q
    ||||||||||| ||| |||||    
T  33669939 acattttgggatggatggagt 33669919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 34252711 - 34252835
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||||||| ||||| |||||||||||||||| |||||  ||| |||  |||||| ||||||| | ||| || |||||||||||||| || |||||||    
T  34252711 tccctccgtcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccattttt 34252810  T
Q  184 gcttacattttgggagggaaggagt 208  Q
    ||||||||||||||| ||| |||||    
T  34252811 gcttacattttgggacggagggagt 34252835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 5727714 - 5727820
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 188  Q
    ||||||| ||||| |||| ||||||||||| | ||| |||| | | |||||||||||||||||||| ||||||||||||||  ||||  |||||| ||||    
T  5727714 tccgtcccaaaatgtaagtaaaaattggtcaataaaaattaatatattggtttaaaatttgtaccagatacatcaacttattgtgacctatttttactta 5727813  T
Q  189 cattttg 195  Q
    |||||||    
T  5727814 cattttg 5727820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 9956614 - 9956490
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||||||| ||||| |||| ||||||||||  |||||  ||| |||  ||| || ||||||| || || |||||||||| ||||||||| |||||||    
T  9956614 tccctccgtcccaaaatgtaagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccattttt 9956515  T
Q  184 gcttacattttgggagggaaggagt 208  Q
     |||||||||||||| ||| |||||    
T  9956514 acttacattttgggatggatggagt 9956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 33498357 - 33498443
Alignment:
Q  88 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgtt 172  Q
    ||||||||||||||||||||||||| |||| | ||||| || | | |  |||||| ||||||||||| |||||||||||||||||||    
T  33498357 cctccgtcctaaaatataagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 12619626 - 12619724
Alignment:
Q  93 gtcctaaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatt 192  Q
    |||||||||||||||||||| ||| || ||||| ||     |||| || ||||||| || ||||||||||||||||||||||  |||||||||||| |||    
T  12619626 gtcctaaaatataagcaaaagttgatcaacaaatata----tttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatatt 12619721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 20185379 - 20185314
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 199  Q
    ||||||| ||||||||||| ||||||||| |||||| || ||||||||||  ||||||||||||||    
T  20185379 tttggttcaaaatttgtacaaaatacatcgacttatattaactcatttttatttacattttgggag 20185314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 9530957 - 9531017
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||    
T  9530957 tttggttcaaaatttatatcaaatacaccaatttatattgactcatttttgcttacatttt 9531017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 34252776 - 34252709
Alignment:
Q  141 taaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    |||| |||| ||||||||||| ||||| |||||||  ||||||||||||||||||||| ||| |||||    
T  34252776 taaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagt 34252709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 504129 - 504207
Alignment:
Q  97 taaaatataagcaaaaattggtctacaaacattagtgtttggtttaaaatttgtaccaaatacatcaacttatgttgac 175  Q
    |||||||||||||||||| |||| ||||| |||| | ||||||| | |||||||| ||||||||| || || |||||||    
T  504129 taaaatataagcaaaaatcggtcaacaaaaattaatatttggttcagaatttgtatcaaatacattaatttttgttgac 504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 968340 - 968287
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||||||||||||||||||||  ||||| || |||| |||||||||||    
T  968340 aaaatttgtaccaaatacatcaacttaaattgacccacttttacttacattttg 968287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 30293428 - 30293481
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||||| || ||||||||||||| ||||||||||||||||| |||| ||||||    
T  30293428 aaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 2424504 - 2424444
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| ||||||||||||| |||||||| |||||||| ||  ||||||||||| |||||    
T  2424504 tttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatatttt 2424444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42324984 - 42324905
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 175  Q
    |||||||||| ||||||||||| |||||  ||| |||  ||| |||||||||| ||||||||||||||| |||| |||||    
T  42324984 aaaatataagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgac 42324905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 17556008 - 17555949
Alignment:
Q  136 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| ||||||| || |||||| ||||||||| |||||||||||||| |||| ||||||    
T  17556008 tggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttg 17555949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 37040147 - 37040220
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    |||| |||||||||||||||  ||||||||||||||||| || ||||||| |||| ||||| ||| ||| |||||    
T  37040147 tttgatttaaaatttgtacctcatacatcaacttatgtt-acccatttttacttatattttaggatggagggagt 37040220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 38958057 - 38958146
Alignment:
Q  88 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgac 175  Q
    ||||||| | |||||||||| |||||||| |  |||||  ||| |||  |||||| ||| ||||||||||||||||||||| ||||||||    
T  38958057 cctccgttccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaactcatgttgac 38958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 17234594 - 17234538
Alignment:
Q  138 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||||||| ||||||||| || |||| || ||||||||||||||| ||||||    
T  17234594 gtttaaaatttgtagcaaatacattaatttatatt-actcatttttgcttatattttg 17234538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 33669988 - 33670045
Alignment:
Q  151 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||||||| ||||| | |||||  ||||||||||||||||||||| ||| |||||    
T  33669988 accaaatacattaactttttttgaccaatttttgcttacattttgggacggatggagt 33670045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 19644502 - 19644427
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgt 171  Q
    |||||||||| || ||||| || ||||| ||||  || ||||||| ||||||| ||| ||||||||||||||||||    
T  19644502 aaaatataagtaagaattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 19758384 - 19758262
Alignment:
Q  89 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttg-actcatttttgc 185  Q
    ||||||| ||||||||||| ||||||||||| |||||  ||| |||  || ||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  19758384 ctccgtcataaaatataagtaaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcatttttgc 19758285  T
Q  186 ttacattttgggagggaaggagt 208  Q
    ||||||||||||| |||||||||    
T  19758284 ttacattttgggacggaaggagt 19758262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 3739927 - 3739806
Alignment:
Q  89 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 186  Q
    ||||||||||||||||||||||||||||||| |||||  ||| |||  |||||| |||||||||||||||||||| |||||  ||||||  |||||||||    
T  3739927 ctccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgct 3739828  T
Q  187 tacattttgggagggaaggagt 208  Q
    || ||||||||| ||| |||||    
T  3739827 tatattttgggacggagggagt 3739806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 37918980 - 37918916
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  37918980 tttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttggga 37918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 30693330 - 30693462
Alignment:
Q  87 ccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttg 184  Q
    |||||||||| |||||||||  |||||||| || ||||| |||| |||  ||| || ||||||||||||||||||||||  ||||||||| ||||||||     
T  30693330 ccctccgtccgaaaatataaataaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttgattcattttta 30693429  T
Q  185 cttacattttgggagggaaggagtgtattgcaa 217  Q
    |||||||||||  | ||||||||| || |||||    
T  30693430 cttacattttgaaacggaaggagtataatgcaa 30693462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 47543593 - 47543717
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    |||||| ||| ||||||||||  ||||||||||| ||||| |||| ||  ||||||| ||||||||||||||||||||||||||| | |   |||||||     
T  47543593 tccctctgtcttaaaatataataaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttg 47543692  T
Q  184 gcttacattttgggagggaaggagt 208  Q
    ||||||||||||||| ||| |||||    
T  47543693 gcttacattttgggacggagggagt 47543717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 5056409 - 5056314
Alignment:
Q  87 ccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatt 180  Q
    ||||| |||| ||||||||| |||||||||||| | ||| ||||  || |||| || |||||||||| ||||||||||||||||||||||||||||    
T  5056409 ccctctgtcccaaaatataaacaaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgactcatt 5056314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 3694091 - 3693991
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||| | ||||||||| ||||| |||| |||  ||| || ||||||||||  ||||||||||| |||||||||||||||| | |||||||||||    
T  3694091 aaaatataagtagaaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttg 3693992  T
Q  196 g 196  Q
    |    
T  3693991 g 3693991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 26265845 - 26265783
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  26265845 tttggttcaaaatttatactaaatacatcaacttatgttaacatatttttgcttacattttgg 26265783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 5693640 - 5693576
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    ||||||||||||||||||| ||| ||||||| |||||||||   |||||||||||||||| ||||    
T  5693640 tttggtttaaaatttgtactaaaaacatcaatttatgttgatatatttttgcttacatttcggga 5693576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 31784787 - 31784843
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    ||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||    
T  31784787 aaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttggga 31784843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 3739808 - 3739918
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||||||| |||||||||||||||||||||| || ||  |||  || ||||||  ||| |||  ||||||||||| ||||| |||||||  ||||||    
T  3739808 tccctccgtcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 3739907  T
Q  184 gcttacatttt 194  Q
    ||||| |||||    
T  3739908 gcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 6061556 - 6061462
Alignment:
Q  106 agcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||||| ||||||| ||||| |||| |||  ||| |||||||||||||| | |||||| |||||||||||  ||||| ||||| |||||||||||    
T  6061556 agcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttggttcattcttgctaacattttggga 6061462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 50381198 - 50381241
Alignment:
Q  150 taccaaatacatcaacttatgttgactcatttttgcttacattt 193  Q
    ||||||||||||||||||||||||| | |||||| |||||||||    
T  50381198 taccaaatacatcaacttatgttgatttatttttccttacattt 50381241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 42711885 - 42711922
Alignment:
Q  157 tacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  42711885 tacatcaacttatgatgacttatttttgcttacatttt 42711922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 27527771 - 27527707
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    ||||||| ||||||| ||||| |||||||||||||| || || |||||||  ||| |||||||||    
T  27527771 tttggttcaaaatttataccagatacatcaacttatatttacccatttttatttatattttggga 27527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 29855102 - 29855162
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| ||||||||||| |||||||| ||||| ||||||   ||||||||||| |||||    
T  29855102 tttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatatttt 29855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 30531222 - 30531296
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  30531222 tttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggagggagt 30531296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 31323820 - 31323922
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| |||||||||||||||| |||||  ||| |||  || ||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  31323820 aaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttg 31323919  T
Q  196 gga 198  Q
    |||    
T  31323920 gga 31323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 35003757 - 35003863
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    |||||||||||||||||| ||||||||||  | ||| |||| |||  ||| || ||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  35003757 tccgtcctaaaatataagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttgattcatttttgctt 35003856  T
Q  188 acatttt 194  Q
    |||||||    
T  35003857 acatttt 35003863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 1986203 - 1986308
Alignment:
Q  91 ccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctta 188  Q
    ||||||||||||||||| |||| |||||| | ||| |||| ||  ||| ||||||||||| ||||||||| || |||||||||||||| ||||||  |||    
T  1986203 ccgtcctaaaatataagtaaaagttggtcaataaaaattaatgcatttagtttaaaatttataccaaatatattaacttatgttgactgatttttattta 1986302  T
Q  189 catttt 194  Q
    ||||||    
T  1986303 catttt 1986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 9829898 - 9829977
Alignment:
Q  99 aaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgact 176  Q
    ||||||||| ||||||| ||| ||||| |||| |||  || ||||||||||||||||||||||||||| |||||||||||    
T  9829898 aaatataagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgact 9829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 30531232 - 30531181
Alignment:
Q  146 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggg 197  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  30531232 tttgaaccaaatacatcaacttatgttgacccgtttttgcttacattttggg 30531181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 9675820 - 9675754
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||||||||| || |||||||||||||||||  |||||||||||||||||| || ||| |||||    
T  9675820 aaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggagggagt 9675754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 14222845 - 14222899
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||||  |||| |||||||||||||||||||| ||||||||||||||||||||    
T  14222845 aaaatttacaccatatacatcaacttatgttgacccatttttgcttacattttgg 14222899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 1937689 - 1937749
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||| |||||||||| ||| |||| ||||||||||| || | |||||||||||||||||||    
T  1937689 tttgatttaaaatttatactaaattcatcaacttatattaattcatttttgcttacatttt 1937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24547237 - 24547189
Alignment:
Q  135 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    |||||||||||||| || |||||||||||| ||||||||||| ||||||    
T  24547237 ttggtttaaaatttatatcaaatacatcaatttatgttgacttattttt 24547189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 13320854 - 13320915
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||| ||||||||  |||| ||||||||||||  ||||||||||| ||||||| ||||||    
T  13320854 tttggtgtaaaatttagaccagatacatcaactttcgttgactcattgttgcttatattttg 13320915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 33822340 - 33822393
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||| ||||||||||||||||| || |  ||||||| |||||||||||    
T  33822340 aaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttg 33822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 2282450 - 2282506
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||| ||||| |||||||||||| ||||||| ||| ||||||||||| || ||||||    
T  2282450 aaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattggga 2282506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 31522723 - 31522613
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||| ||||| ||||| ||||||||| |||||| |||||  ||| ||  |||| || ||||||||||||| |||||||   |||| || ||| ||||||    
T  31522723 tcccttcgtcccaaaatgtaagcaaaa-ttggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacatcgttttatattaacttattttt 31522625  T
Q  184 gcttacattttg 195  Q
    ||||||||||||    
T  31522624 gcttacattttg 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 35901147 - 35901039
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgttt--ggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    ||||||||||||||||||||||||| |||| |||||  ||| ||| |  || | ||||||||||| || |||||||||||||||||||||||||||||||    
T  35901147 tccgtcctaaaatataagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgctt 35901048  T
Q  188 acattttgg 196  Q
    | |||||||    
T  35901047 atattttgg 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 9548154 - 9548052
Alignment:
Q  97 taaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||| ||||||||| || ||||| |||| | |  |||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  9548154 taaaatataaacaaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt-cttgcatttt 9548056  T
Q  195 ggga 198  Q
    ||||    
T  9548055 ggga 9548052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 29798005 - 29797944
Alignment:
Q  135 ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  29798005 ttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttgg 29797944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 11114284 - 11114344
Alignment:
Q  138 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    ||||||||||| |||||||||||||||||||||||||   |||||| |||| |||||||||    
T  11114284 gtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttggga 11114344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 32729772 - 32729727
Alignment:
Q  153 caaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||||||||||| || |||||| |||||||||||||||||||||||    
T  32729772 caaatacatcaatttttgttgattcatttttgcttacattttggga 32729727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 37627968 - 37627916
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||| ||||||||||||||||| || ||| |||||| ||||||||||    
T  37627968 aaaatttgtatcaaatacatcaacttatattaacttatttttacttacatttt 37627916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 13210008 - 13210049
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgac 175  Q
    ||||||| |||||||||| || ||||||||||||||||||||    
T  13210008 tttggttcaaaatttgtatcagatacatcaacttatgttgac 13210049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 33557833 - 33557781
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactca-tttttgcttacatttt 194  Q
    |||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||    
T  33557833 aaaatttgtatcaaatacataaacttatgttga-tcattttttgcttacatttt 33557781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 6803308 - 6803425
Alignment:
Q  93 gtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttaca 190  Q
    |||| ||||||||||||||| |||||| |||||  ||| |||  || ||||||||||||||||||||||  |||||| ||||||||| ||||||||| ||    
T  6803308 gtcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatacgccaacttgtgttgactcgtttttgcttgca 6803407  T
Q  191 ttttgggagggaaggagt 208  Q
    |||| ||| |||||||||    
T  6803408 ttttaggacggaaggagt 6803425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 18732101 - 18731992
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    ||||||||||||| |||| ||||||||||| | |||  ||| |||  |||||| ||||||| ||||| ||||||||| |||||||||  |||||||||||    
T  18732101 tccgtcctaaaatgtaag-aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgctt 18732003  T
Q  188 acattttggga 198  Q
    | |||||||||    
T  18732002 atattttggga 18731992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 3769815 - 3769757
Alignment:
Q  138 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||    
T  3769815 gtttaaaatttgtattaaatacatcaacttgtgttgactcatttttacttgcattttgg 3769757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 16866501 - 16866393
Alignment:
Q  102 tataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 199  Q
    |||||||||||||||||| |||||  ||| |||  |||||| |||||||||||| ||||||| ||||| | ||||   ||||||||||| |||||||||     
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggat 16866402  T
Q  200 ggaaggagt 208  Q
    ||| |||||    
T  16866401 ggagggagt 16866393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 23971290 - 23971191
Alignment:
Q  96 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 193  Q
    |||||||||||| ||||||||||| ||||| || | | |  || ||| |||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  23971290 ctaaaatataag-aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatattt 23971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 32652472 - 32652411
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||||| ||| ||||||||||||||| ||| ||||||||||| |||||| |||||||||||    
T  32652472 tttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacattttg 32652411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 44816511 - 44816572
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||||| ||||||||||||||||||||||  |||| || | ||||||||||||||||||||    
T  44816511 tttggttcaaaatttgtaccaaatacatcagtttatattaattcatttttgcttacattttg 44816572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 47967911 - 47968006
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||| ||||||||| ||||| | |||| ||||| |||  |||  || ||||||||||||||| |||||||| |||||||||||| ||||||||    
T  47967911 tccgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcattttt 47968006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 3719874 - 3719982
Alignment:
Q  89 ctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgct 186  Q
    |||| ||| |||||||| | ||||||||||| || ||  |||||||  |||||| ||| ||| ||| | |||||||||||||||||||   |||||||||    
T  3719874 ctccatcccaaaatatatgtaaaaattggtcaactaaagttagtgtatttggttcaaattttttacgagatacatcaacttatgttgatcaatttttgct 3719973  T
Q  187 tacattttg 195  Q
    |||||||||    
T  3719974 tacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 27147659 - 27147603
Alignment:
Q  138 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||||||| ||||||||| ||||| |||||||| |||||| |||| |||||    
T  27147659 gtttaaaatttgtatcaaatacattaacttttgttgactaatttttacttatatttt 27147603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 14773517 - 14773576
Alignment:
Q  136 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  14773517 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 14773576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 15223969 - 15224028
Alignment:
Q  136 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| ||||||| || || ||||||||||||| |||||||||||||| |||| ||||||    
T  15223969 tggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttg 15224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 1554951 - 1554918
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtc 119  Q
    ||||||||||||||||||||| ||||||||||||    
T  1554951 tccctccgtcctaaaatataaacaaaaattggtc 1554918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 4259408 - 4259324
Alignment:
Q  100 aatataagcaaaaattggtcta-caaacattagtgt-ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttt 182  Q
    ||||||||||||||||| |||| ||||  ||| ||| || ||| ||||||| ||  |||||||| ||||||||||||||||||||    
T  4259408 aatataagcaaaaattgatctaacaaaagttaatgtatttgttcaaaatttatagtaaatacattaacttatgttgactcatttt 4259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 5026192 - 5026220
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatg 170  Q
    |||||||||||||||||||||||||||||    
T  5026192 aaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 54235338 - 54235227
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcattttt 183  Q
    ||||||| | || |||||||| ||||||||| || |||||  ||| |||  |||||| ||||||||||| ||||||||||| |||| |||||||||||||    
T  54235338 tccctccattcttaaatataaacaaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcattttt 54235239  T
Q  184 gcttacattttg 195  Q
    ||||||||||||    
T  54235238 gcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 12276816 - 12276938
Alignment:
Q  88 cctccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgc 185  Q
    |||||||||||||||||||| ||| |||||||  ||||  ||| |||  ||| || ||||||| ||| ||||||||||||||||||||||  ||||||||    
T  12276816 cctccgtcctaaaatataagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgc 12276915  T
Q  186 ttacattttgggagggaaggagt 208  Q
    ||| ||||||| | |||||||||    
T  12276916 ttatattttggaatggaaggagt 12276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 30848704 - 30848592
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtacc--aaatacatcaacttatgttgactcatttttgc 185  Q
    ||||| ||||||| |||||||||||||||| ||||| |||| |||  || ||| |||||||||||   | |||||||||||||||||||  |||||||||    
T  30848704 tccgttctaaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgc 30848605  T
Q  186 ttacattttggga 198  Q
    |||||||||||||    
T  30848604 ttacattttggga 30848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 4423201 - 4423257
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  4423201 aaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttggga 4423257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 5496917 - 5496857
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  5496917 tttggttcaaaatttgtaccaaataaatcaacttatattgactcatttttgtttacatttt 5496857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 51714291 - 51714236
Alignment:
Q  143 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||||||||||| ||| |||||||||||| ||  ||||||||||||||||||||||    
T  51714291 aaatttgtaccagataaatcaacttatgtcgatccatttttgcttacattttggga 51714236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 2734228 - 2734171
Alignment:
Q  151 accaaatacatcaacttatgttgactcatttttgcttacattttgggagggaaggagt 208  Q
    ||||||||||| ||||| |||||||| |||||| |||| ||||||||| |||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacggaaggagt 2734171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 24980729 - 24980631
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||| |||||||||||| ||| ||||| |||| |||  || ||  |||||||||  || |||||||||||||||||||  ||||||| ||||||||||    
T  24980729 aaaatgtaagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacatttt 24980631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 2871550 - 2871607
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggag 199  Q
    ||||||| ||| |||||||||||||| |||| ||  ||||||||||| ||||||||||    
T  2871550 aaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttgggag 2871607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 13777193 - 13777136
Alignment:
Q  138 gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||||||||||  |||||||||||||||||  |||||||| ||||| ||| ||||||    
T  13777193 gtttaaaatttgatccaaatacatcaacttactttgactcacttttgattatattttg 13777136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 37783907 - 37783960
Alignment:
Q  143 aaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||| ||||| ||||||||||||||||| |||| ||||  ||||||||||||    
T  37783907 aaatttataccacatacatcaacttatgttaactcgttttcacttacattttgg 37783960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 38940748 - 38940776
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaat 114  Q
    |||||||||||||||||||||||||||||    
T  38940748 tccctccgtcctaaaatataagcaaaaat 38940776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 35938 - 36048
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgctt 187  Q
    |||||| ||||||||||  |||||||| || |||| | ||| |||  |||||  |||||||||| |||||||||||| |||| |||||||||||||| ||    
T  35938 tccgtcttaaaatataaataaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgttt 36037  T
Q  188 acattttggga 198  Q
    |||||||||||    
T  36038 acattttggga 36048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 32221574 - 32221472
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| |||||||||||| ||| |||||  ||| |||  |||||| ||||||||||||||||||||||| ||||| |||   ||||||||||||||||||    
T  32221574 aaaatgtaagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttg 32221475  T
Q  196 gga 198  Q
    |||    
T  32221474 gga 32221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 26914553 - 26914452
Alignment:
Q  98 aaaatataagcaaaaattggtctacaaacattagtgtttg--gtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    ||||| ||||||||||||| || ||||| |||| ||| ||  ||| ||||||| ||| ||||||||||||||| |||| | |||||||||||||||||||    
T  26914553 aaaatgtaagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtc-catttttgcttacattttg 26914455  T
Q  196 gga 198  Q
    |||    
T  26914454 gga 26914452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 31280159 - 31280269
Alignment:
Q  96 ctaaaatataagcaaaaattggtctacaaacattagtgt--ttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattt 193  Q
    |||||||||||| |||||||| || |||||  ||| |||  |||||| ||||||||||||| |||||| || |||||||||  ||||||| ||||| |||    
T  31280159 ctaaaatataagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttt 31280258  T
Q  194 tgggagggaag 204  Q
    ||||| |||||    
T  31280259 tgggatggaag 31280269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 47783122 - 47783184
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    ||||||| |||||||||| || |||||||  |||||||||||||||||||||||| |||||||    
T  47783122 tttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttgg 47783184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 26104270 - 26104322
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||| |||| | ||||| |||||||||||||||||||||||||||||    
T  26104270 aaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacatttt 26104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 37330973 - 37331039
Alignment:
Q  136 tggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgggaggga 202  Q
    ||||| ||||||||||| | |||| |||| ||||||| || |||||||||||||||||| |||||||    
T  37330973 tggttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacattttcggaggga 37331039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 11256577 - 11256630
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||||||||| ||||||||||||| |||||| | ||||||||||||| ||||||    
T  11256577 aaaatttgtatcaaatacatcaacatatgttaattcatttttgcttatattttg 11256630  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 32221526 - 32221575
Alignment:
Q  146 tttgtaccaaatacatcaacttatgttgactcatttttgcttacattttg 195  Q
    |||| ||||||||||| ||||| |||||||| ||||||||||||||||||    
T  32221526 tttgaaccaaatacattaacttttgttgactaatttttgcttacattttg 32221575  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 15282705 - 15282641
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttggga 198  Q
    |||| ||||||||||||| || || ||||||||||||||||  |||||||| ||| |||||||||    
T  15282705 tttgatttaaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttggga 15282641  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 29637499 - 29637439
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||| |||||||||| |||||| || || ||||||||||| |||||| ||||||||||    
T  29637499 tttggttcaaaatttgtatcaaatatattaatttatgttgacttattttttcttacatttt 29637439  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 46733069 - 46733121
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||||||| ||||| ||||| |||| ||||||| |||||||||||||||||    
T  46733069 aaaatttgtatcaaatgcatcagcttacgttgacttatttttgcttacatttt 46733121  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 46829047 - 46829082
Alignment:
Q  90 tccgtcctaaaatataagcaaaaattggtctacaaa 125  Q
    |||||||||||||||||||||||||||||| |||||    
T  46829047 tccgtcctaaaatataagcaaaaattggtcaacaaa 46829082  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 46829158 - 46829119
Alignment:
Q  86 tccctccgtcctaaaatataagcaaaaattggtctacaaa 125  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  46829158 tcccttcgtcctaaaatataagcaaaaattggtcaacaaa 46829119  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 18364220 - 18364273
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||||||  || ||||||||||||||||| || ||||||||||||||||||||    
T  18364220 aaaatttgtgtcagatacatcaacttatgttaac-catttttgcttacattttgg 18364273  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 5307341 - 5307433
Alignment:
Q  106 agcaaaaattggtctacaaacattagtg--tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    |||||||||||||| | ||| |||| ||  ||| ||||||||||||||  | |||||||||| ||||| ||  |||||||| |||||||||||    
T  5307341 agcaaaaattggtcaataaaaattaatggatttcgtttaaaatttgtattagatacatcaacgtatgtagatccatttttgtttacattttgg 5307433  T

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Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 37955 - 38015
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||    
T  37955 tttggtttaaaatttataccaaatacatcaatttatattgactcgtttttgtttacatttt 38015  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 94998 - 95050
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||    
T  94998 aaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 13218 - 13278
Alignment:
Q  134 tttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    ||||||||||||||||||| | |||||||||||||| || |||| ||||| ||||||||||    
T  13218 tttggtttaaaatttgtacaagatacatcaacttatattaactcgtttttacttacatttt 13278  T

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Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 13223 - 13178
Alignment:
Q  151 accaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  13223 accaaatacattaacttttgttgatccatttttgcttacattttgg 13178  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 20467 - 20368
Alignment:
Q  97 taaaatataagcaaaaattggtctacaaacatta--gtgtttggtttaaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacatttt 194  Q
    |||||| ||||||||||||||||   ||| ||||  || | ||||||||||||||||  |||||||| || ||||||||||  |||||| ||||||||||    
T  20467 taaaatgtaagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacatttt 20368  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 51279 - 51225
Alignment:
Q  142 aaaatttgtaccaaatacatcaacttatgttgactcatttttgcttacattttgg 196  Q
    ||||||| ||||||||||||||||||||||||||    ||||||||| |||||||    
T  51279 aaaatttataccaaatacatcaacttatgttgacaatcttttgcttaaattttgg 51225  T

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