View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8741_low_1 (Length: 623)

Name: NF8741_low_1
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8741_low_1
NF8741_low_1
[»] chr3 (5 HSPs)
chr3 (401-610)||(1138409-1138618)
chr3 (18-194)||(1138868-1139044)
chr3 (234-354)||(1138665-1138785)
chr3 (18-132)||(48119058-48119173)
chr3 (545-586)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (549-586)||(3110531-3110568)
chr2 (545-582)||(28044709-28044746)
[»] chr1 (4 HSPs)
chr1 (545-586)||(6025961-6026002)
chr1 (549-584)||(1118941-1118976)
chr1 (541-586)||(26161596-26161641)
chr1 (85-132)||(41475368-41475416)
[»] chr5 (1 HSPs)
chr5 (548-580)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (540-583)||(32888960-32889003)
chr7 (548-584)||(7245942-7245978)
[»] chr6 (3 HSPs)
chr6 (550-584)||(2730831-2730865)
chr6 (548-585)||(26373115-26373152)
chr6 (241-289)||(18699812-18699860)
[»] chr4 (3 HSPs)
chr4 (545-583)||(207500-207538)
chr4 (549-586)||(47789196-47789233)
chr4 (276-304)||(51034024-51034052)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 401 - 610
Target Start/End: Complemental strand, 1138618 - 1138409
Alignment:
Q  401 gtctgttacaaataatgtggagaaatgaaaatggcattttttgaagctaatgtgtgaacgaaagatggggacatcacgacggtggttcaatatcgaccac 500  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1138618 gtctgtcacaaataatgtggagaaatgaaaatggcattttttgaagctaatctgtgaatgaaagatggggacatcatgacggtggttcaatatcgaccac 1138519  T
Q  501 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138518 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 1138419  T
Q  601 atagtataat 610  Q
    ||||||||||    
T  1138418 atagtataat 1138409  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 1139044 - 1138868
Alignment:
Q  18 gatataatatcacgcattactcagttcaaaacgtggcatatgattgaaatggaataaaaggttacgcaaagaatatggttgctaacatatgacttcgaat 117  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||    
T  1139044 gatataatatcacgcattactcagttcaaaaagtggcatacgattgaaatggaataaaaggctacgcacaaaatatggttgctaacatatgacttcaaat 1138945  T
Q  118 tttaccttccttctttggtatgctttagttgcatattcaaaattggtgggataatctattgcaacagtgttactaca 194  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1138944 tttaccttccttcttaggtatgctttagttgcatattcaatattggcgggataatctattgcaacagtgttactaca 1138868  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 1138785 - 1138665
Alignment:
Q  234 ggggtgattgaaattgtggatctctggatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 333  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138785 ggggtgattgaaattgtggatctcttgatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 1138686  T
Q  334 tttcttctgattggttgtttg 354  Q
    |||||||||||||||||||||    
T  1138685 tttcttctgattggttgtttg 1138665  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 48119058 - 48119173
Alignment:
Q  18 gatataatatcacgcattactcagttcaaaacgtggcatatgattgaaatggaataaaaggttacgcaaagaatatggttgctaacatatgacttcga-a 116  Q
    |||||||||||| |||||||||||||||| | ||| ||||  ||||| ||| | |||||||  ||  ||||||||||| | |||||||||||||||||      
T  48119058 gatataatatcatgcattactcagttcaacaagtgccatacaattgagatgaactaaaaggccacataaagaatatggcttctaacatatgacttcgact 48119157  T
Q  117 ttttaccttccttctt 132  Q
    ||||||||||||||||    
T  48119158 ttttaccttccttctt 48119173  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 586
Target Start/End: Complemental strand, 28802805 - 28802764
Alignment:
Q  545 tatgctatttagtacaaagagttgtcaaatagtggctatagc 586  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  28802805 tatgctatttaatataaagtgttgtcaaatagtggctatagc 28802764  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 586
Target Start/End: Complemental strand, 3110568 - 3110531
Alignment:
Q  549 ctatttagtacaaagagttgtcaaatagtggctatagc 586  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3110568 ctatttagtacaaagcgttgtcaaatagtggctatagc 3110531  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 582
Target Start/End: Complemental strand, 28044746 - 28044709
Alignment:
Q  545 tatgctatttagtacaaagagttgtcaaatagtggcta 582  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  28044746 tatgcgatttagtacaaagtgttgtcaaatagtggcta 28044709  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 545 - 586
Target Start/End: Complemental strand, 6026002 - 6025961
Alignment:
Q  545 tatgctatttagtacaaagagttgtcaaatagtggctatagc 586  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  6026002 tatgctatttagtacaaaatgttgtcaaatagtggctatagc 6025961  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 584
Target Start/End: Original strand, 1118941 - 1118976
Alignment:
Q  549 ctatttagtacaaagagttgtcaaatagtggctata 584  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1118941 ctatttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 586
Target Start/End: Complemental strand, 26161641 - 26161596
Alignment:
Q  541 gtggtatgctatttagtacaaagagttgtcaaatagtggctatagc 586  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||    
T  26161641 gtggtatgctatttagtacaaagtattgtcaaatagcagctatagc 26161596  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 41475368 - 41475416
Alignment:
Q  85 aaagaatatggttgctaacatatgacttcga-attttaccttccttctt 132  Q
    ||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  41475368 aaagaatatggcttctaacatatgacttcgactttttaccttccttctt 41475416  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 580
Target Start/End: Complemental strand, 28734201 - 28734169
Alignment:
Q  548 gctatttagtacaaagagttgtcaaatagtggc 580  Q
    |||||||||||||||||||||||||||||||||    
T  28734201 gctatttagtacaaagagttgtcaaatagtggc 28734169  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 583
Target Start/End: Original strand, 32888960 - 32889003
Alignment:
Q  540 agtggtatgctatttagtacaaagagttgtcaaatagtggctat 583  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  32888960 agtgatatgctatttagtacaaagtattgtcaaatagtggctat 32889003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 7245978 - 7245942
Alignment:
Q  548 gctatttagtacaaagagttgtcaaatagtggctata 584  Q
    |||||||||||||||| |||||||||||| |||||||    
T  7245978 gctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 584
Target Start/End: Complemental strand, 2730865 - 2730831
Alignment:
Q  550 tatttagtacaaagagttgtcaaatagtggctata 584  Q
    |||||||||||||| ||||||||||||||||||||    
T  2730865 tatttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 26373115 - 26373152
Alignment:
Q  548 gctatttagtacaaagagttgtcaaatagtggctatag 585  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26373115 gctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 18699860 - 18699812
Alignment:
Q  241 ttgaaattgtggatctctggatggaaacacttcagaacttccagaacca 289  Q
    |||||||||| ||||||| || |||| ||||||| ||||||||||||||    
T  18699860 ttgaaattgtagatctctagaaggaagcacttcataacttccagaacca 18699812  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 583
Target Start/End: Original strand, 207500 - 207538
Alignment:
Q  545 tatgctatttagtacaaagagttgtcaaatagtggctat 583  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  207500 tatgctatttagtacaaagtattgtcaaatagtggctat 207538  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 586
Target Start/End: Original strand, 47789196 - 47789233
Alignment:
Q  549 ctatttagtacaaagagttgtcaaatagtggctatagc 586  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47789196 ctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 51034052 - 51034024
Alignment:
Q  276 aacttccagaaccaagtttacttcttcga 304  Q
    |||||||||||||||||||||||||||||    
T  51034052 aacttccagaaccaagtttacttcttcga 51034024  T

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