View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_low_10 (Length: 333)
Name: NF8741_low_10
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 8016343 - 8016135
Alignment:
| Q |
18 |
acataagacggcgttgtacggtttccttgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatcta |
117 |
Q |
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|||||||||||||| || ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8016343 |
acataagacggcgtcgttcggttcccttgatcattagcaatgatctcaacacgatcgtgttgccatactccaacacacgagtacgttgttcccagatcta |
8016244 |
T |
|
| Q |
118 |
ttccaatcgcaggtccttctccttttccggccattgttgatggattcaagaacgctagggtttggtttttgtgaaagaatg-agaagagagaaaagtgtt |
216 |
Q |
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|||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||| | |||||||||||| ||| |
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| T |
8016243 |
ttccgattgcaggaccttctccttttccggccattgttgatgaattcaagaacgctagggtttggtttacgagaa--aatgtaaaagagagaaaagagtt |
8016146 |
T |
|
| Q |
217 |
tgtgttagggt |
227 |
Q |
| |
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||||||||||| |
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| T |
8016145 |
tgtgttagggt |
8016135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 8104117 - 8104229
Alignment:
| Q |
18 |
acataagacggcgttgtacggtttccttgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatcta |
117 |
Q |
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||||||||||| || || | ||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8104117 |
acataagacggtgtcgttctgttcccttgatcattagcaatgatctcaacacgatcgtgttgccatactccaacacacgagtacgttgttcccagatcta |
8104216 |
T |
|
| Q |
118 |
ttccaatcgcagg |
130 |
Q |
| |
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|||| || ||||| |
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| T |
8104217 |
ttccgattgcagg |
8104229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 39987019 - 39987151
Alignment:
| Q |
21 |
taagacggcgttgtacggtttccttgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattc |
120 |
Q |
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||||||||||| |||||||| ||||| || ||||||||||| |||||||| || ||||||||||| || || || |||||||| ||||| ||||| |||| |
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| T |
39987019 |
taagacggcgtggtacggttaccttggtcgttggcgatgatttcaacacggtcatgttgccatacaccgacgcatgagtatgtggttccaagatcgattc |
39987118 |
T |
|
| Q |
121 |
caatcgcaggtccttctccttttccggccattg |
153 |
Q |
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| ||||| ||||||||||| ||||||||||||| |
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| T |
39987119 |
cgatcgctggtccttctccctttccggccattg |
39987151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 8016126 - 8016076
Alignment:
| Q |
272 |
aattgtgaaggtctttatataatggagtttttgagattctagaatgttctt |
322 |
Q |
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||||||||| || |||||||||| ||||||||| ||||||||||||||||| |
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| T |
8016126 |
aattgtgaaagtgtttatataatagagtttttgggattctagaatgttctt |
8016076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 23595378 - 23595272
Alignment:
| Q |
45 |
tgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattccaatcgcaggtccttctccttttc |
144 |
Q |
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|||||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
23595378 |
tgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagttgttcccaaatctattccaattgcaggtccttctccttttc |
23595279 |
T |
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| Q |
145 |
cggccat |
151 |
Q |
| |
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| ||||| |
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| T |
23595278 |
cagccat |
23595272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 23586545 - 23586439
Alignment:
| Q |
45 |
tgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattccaatcgcaggtccttctccttttc |
144 |
Q |
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|||||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| |||||||||| |||||||||||| ||||||||||| ||||||| |
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| T |
23586545 |
tgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagttgttcccaaatctattccaattgcaggtccttcgccttttc |
23586446 |
T |
|
| Q |
145 |
cggccat |
151 |
Q |
| |
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| ||||| |
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| T |
23586445 |
cagccat |
23586439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 17716165 - 17716074
Alignment:
| Q |
42 |
ccttgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattccaatcgcaggtcc |
133 |
Q |
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| T |
17716165 |
ccttggtcgttggcgatgatttcaacacggtcatgttgccatacacctacgcatgagtatgtggttcccagatcgatcccgatcgctggtcc |
17716074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 17666182 - 17666070
Alignment:
| Q |
21 |
taagacggcgttgtacggtttccttgatcattggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattc |
120 |
Q |
| |
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|||||||| || || | ||| ||||| || ||||||||||| |||||||| || |||| |||||| || || || |||||||| ||||| ||||| || | |
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| T |
17666182 |
taagacggtgtggttctgttaccttggtcgttggcgatgatttcaacacggtcatgtttccatacaccgacgcatgagtatgtggttccgagatcgatcc |
17666083 |
T |
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| Q |
121 |
caatcgcaggtcc |
133 |
Q |
| |
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||||||| ||||| |
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| T |
17666082 |
caatcgctggtcc |
17666070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 17621414 - 17621332
Alignment:
| Q |
51 |
ttggcgatgatctcaacacgatcgtgttgccatactccaacacacgagtatgttgttcccagatctattccaatcgcaggtcc |
133 |
Q |
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||||||||||| |||||||| || ||||| ||||| || || || |||||||| ||||| ||||| || |||||||| ||||| |
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| T |
17621414 |
ttggcgatgatttcaacacggtcatgttgacatacacctacgcatgagtatgtggttccgagatcgatcccaatcgctggtcc |
17621332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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