View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_low_11 (Length: 326)
Name: NF8741_low_11
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 12381953 - 12381655
Alignment:
| Q |
9 |
agcagagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12381953 |
agcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagt |
12381854 |
T |
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| Q |
109 |
gaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12381853 |
gaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatc |
12381754 |
T |
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| Q |
209 |
caaattcatcacttcaagatcgtggattagctattaaaaatgtttagcttaaattgtagaatttctagtgttttgtcacattcatattctcctaaggtg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12381753 |
caaattcatcacttcaagatcgtggattagctattaaaaatgtttagcttaaattgtagaatttctagtgttttgtcacattcctattctcctaaggtg |
12381655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 12386020 - 12385722
Alignment:
| Q |
9 |
agcagagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12386020 |
agcacagagtggttgtaaacacaaagaaagaaaggttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagt |
12385921 |
T |
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| Q |
109 |
gaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12385920 |
gaatgagaaaaatcctgcaagatataaaccatacaatgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatc |
12385821 |
T |
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| Q |
209 |
caaattcatcacttcaagatcgtggattagctattaaaaatgtttagcttaaattgtagaatttctagtgttttgtcacattcatattctcctaaggtg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12385820 |
caaattcatcacttcaagatcgtggattagctattaaaaatgtttagcttaaattgtagaatttctagtgttttgtcacattcctattctcctaaggtg |
12385722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 44 - 307
Target Start/End: Complemental strand, 12365029 - 12364766
Alignment:
| Q |
44 |
ttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagtgaatgagaaaaatcctgcaagatataaaccataca |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12365029 |
ttttccattccattcttcttttacccaggtcaccatgttacagtgaagcctgcagaagagctagtgaatgagaaaaatcctgcaagatataaaccataca |
12364930 |
T |
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| Q |
144 |
atgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatccaaattcatcacttcaagatcgtggattagctatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12364929 |
atgttggcaagttctatgctaatagaaaccgtagtgatttcaacaaacgtgaggttgagaatatccaaattcatcacttcaagatcgtggattagctatt |
12364830 |
T |
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| Q |
244 |
aaaaatgtttagcttaaattgtagaatttctagtgttttgtcacattcatattctcctaaggtg |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
12364829 |
aaaaatgtttagcttaaattgtagaatttctggtgttttgtcacattcctattctcctaaggtg |
12364766 |
T |
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