View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_low_17 (Length: 245)
Name: NF8741_low_17
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 5593455 - 5593361
Alignment:
| Q |
151 |
taatataatagtggttgttgtccttacagttagttccttaaattttatttccataattatcctttctctttctctctcctccttcaactatatct |
245 |
Q |
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| T |
5593455 |
taatataatagtggttgttgtccttacagttagttccataaattttatttccataattatcctttatctttctctctcctccttcaactatatct |
5593361 |
T |
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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 5593567 - 5593481
Alignment:
| Q |
40 |
cgggtaggggcaattgaggaaagagagtggtaaaagagtaagagcacgcaaccatctgtgaaagtacattaacattacagtgaagcc |
126 |
Q |
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| T |
5593567 |
cgggtaggggcaattgaggaaagaaagtggtaaaagagtaagagcacgcaaccatctgtgaaagtacattaacattacagtgaagcc |
5593481 |
T |
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