View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8741_low_2 (Length: 610)

Name: NF8741_low_2
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8741_low_2
NF8741_low_2
[»] chr3 (4 HSPs)
chr3 (1-204)||(1653990-1654193)
chr3 (266-390)||(1653802-1653926)
chr3 (451-499)||(1653693-1653741)
chr3 (451-491)||(3969288-3969328)
[»] chr1 (3 HSPs)
chr1 (62-200)||(26841590-26841725)
chr1 (268-358)||(26841797-26841887)
chr1 (451-496)||(13986965-13987010)
[»] chr8 (2 HSPs)
chr8 (62-200)||(15049643-15049780)
chr8 (268-358)||(15049862-15049952)
[»] chr2 (1 HSPs)
chr2 (451-490)||(9561543-9561582)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1654193 - 1653990
Alignment:
Q  1 catccgcatcaccactggtctctggtgggtgcgtcgacggctgggtttcctcagattgtaacttgcggtggtggtggtttttaaggtgatttgtggtggt 100  Q
    ||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  1654193 catccgcatcacctctggtctctggtgggtgcgccagcggctgggtttcctcagatcataacttgcggtggtggtggtttttaaggtgatttgtggtggt 1654094  T
Q  101 ttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttccttttatggctgttttcgagcttgtttttggtgggttaagtt 200  Q
    ||||||| ||||| |||||||||||||||||||||||   |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1654093 ttcttcatctcctctgtatggtttccatggtgtgtttgagtggtgttcagatatgttccttttatggctgttttcgagcttgtttttggtgggttaagtt 1653994  T
Q  201 attt 204  Q
    ||||    
T  1653993 attt 1653990  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 266 - 390
Target Start/End: Complemental strand, 1653926 - 1653802
Alignment:
Q  266 tctgttgcgccagtgaaaggtcgttatgggggtggtcgttaatggttcactagcaggtaagaggtgggtggttgcggttgtgtagtgtgtgtttctgtta 365  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |    
T  1653926 tctgttgcgccagtgagaggtcgttatgggggtggtcgttaatggttcactagcgggtaagaggtgggtggttgtggttgtgtagtgtgtgtttctgtca 1653827  T
Q  366 gctgttccgacttctccagggggac 390  Q
    ||||||||||||||||| |||||||    
T  1653826 gctgttccgacttctccggggggac 1653802  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 1653741 - 1653693
Alignment:
Q  451 ccgaaggagtgggtggtggttttgcgccaccgtcctctttgggtgttgc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653741 ccgaaggagtgggtggtggttttgcgccaccgtcctctttgggtgttgc 1653693  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 3969328 - 3969288
Alignment:
Q  451 ccgaaggagtgggtggtggttttgcgccaccgtcctctttg 491  Q
    |||||||||||||||||||||||||| | ||||| ||||||    
T  3969328 ccgaaggagtgggtggtggttttgcgtcgccgtcttctttg 3969288  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 26841590 - 26841725
Alignment:
Q  62 cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt 161  Q
    |||||||| ||||| ||||| |||| | ||| ||||||| |||||| ||||| |||| ||||| |||||| ||||||  |||| ||   |||||||||||    
T  26841590 cttgcggttgtggttgttttcaaggcggtttctggtggtctcttcatctcctctgtacggttttcatggtttgtttcagtggtgtt---atatgttcctt 26841686  T
Q  162 ttatggctgttttcgagcttgtttttggtgggttaagtt 200  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  26841687 ttatggctgttttcgagatagtttttggtgggttaagtt 26841725  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 26841797 - 26841887
Alignment:
Q  268 tgttgcgccagtgaaaggtcgttatgggggtggtcgttaatggttcactagcaggtaagaggtgggtggttgcggttgtgtagtgtgtgtt 358  Q
    |||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| ||  | |||||||||||||| ||||||| |||||||||    
T  26841797 tgttgcaccagtgagaggtcgttatgagggtggtggttaatggttcactagccggccaaaggtgggtggttgcagttgtgtggtgtgtgtt 26841887  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 13986965 - 13987010
Alignment:
Q  451 ccgaaggagtgggtggtggttttgcgccaccgtcctctttgggtgt 496  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  13986965 ccgaaggagtgggtggtggttttgcgtcgccgtcctctttgggtgt 13987010  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 15049643 - 15049780
Alignment:
Q  62 cttgcggtggtggtggtttttaaggtgatttgtggtggtttcttcaactcctatgtatggtttccatggtgtgtttctttggtatttagatatgttcctt 161  Q
    |||| ||| ||||||||||| |||||| ||| || ||||||||||| ||||| | || | |||||||||| |||||   |||| || ||||||||||| |    
T  15049643 cttgtggttgtggtggttttcaaggtggtttttgatggtttcttcatctcctctatacg-tttccatggtttgttttagtggttttcagatatgttccat 15049741  T
Q  162 ttatggctgttttcgagcttgtttttggtgggttaagtt 200  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  15049742 ttatggctattttcgagctagtttttggtgggttaagtt 15049780  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 15049862 - 15049952
Alignment:
Q  268 tgttgcgccagtgaaaggtcgttatgggggtggtcgttaatggttcactagcaggtaagaggtgggtggttgcggttgtgtagtgtgtgtt 358  Q
    ||||||| | |||| ||||||||||||||||||| ||||||||||||||||  ||  | ||||| |||||||||||| ||| |||||||||    
T  15049862 tgttgcgtcggtgagaggtcgttatgggggtggtggttaatggttcactagtcggccataggtgtgtggttgcggttatgtggtgtgtgtt 15049952  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 490
Target Start/End: Complemental strand, 9561582 - 9561543
Alignment:
Q  451 ccgaaggagtgggtggtggttttgcgccaccgtcctcttt 490  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  9561582 ccgaaggagtgggtggtggttttgcgtcatcgtcctcttt 9561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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