View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_low_4 (Length: 531)
Name: NF8741_low_4
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 4569702 - 4570198
Alignment:
| Q |
19 |
agttgaagcatgcatggatggtttaatccttcttccggttttgggtcgggtactaactgttcaacaaaatgggaagatgggtcgtcgtcgaggtagttta |
118 |
Q |
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| T |
4569702 |
agttgaagcatgcatggatggtttaatccttcttccggttttgggtcgggtactaactgttcaacaaaatgggaagatgggtcgtcgtcgaggtagttta |
4569801 |
T |
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| Q |
119 |
cggattcgagagtgatgtctacggtggcgtgaatgagaggaacgctgtcttggcttttggagcagaagagttcgaggcggtggttgtggtagcggagtgt |
218 |
Q |
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| T |
4569802 |
cggattcgagagtgatgtctacggtggcgtggatgagaggaacgctgtcttggcttttggagcagaagagttcgaggcggtggttgtggtagcggagtgt |
4569901 |
T |
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| Q |
219 |
ggcggcgagtgggtagtaatgagggagagtttttgagagggaggaggagatgacggtgaagggatcannnnnnnnnnnnnnnnnnnctgtgtaagcgcgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4569902 |
ggcggcgagtgggtagtaatgagggagagtttttgagagggaggaggagatgacggtgaagggatcatggtggtgggtggtggtggctgtgtaagcgcgg |
4570001 |
T |
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| Q |
319 |
aggtagcgtatggttgtattgaggttgcggtcggtgtcgaggtgggagagagggagggtgtggtcttcaaggaagggggtgtgagaaggaaaaatgagaa |
418 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4570002 |
aggtagcgtatggttgtattgaggttgcggtcgatgtcgaggtgggagagagggagggtgtggtcttcaaggaagggggtgtgagaaggaaaaatgagag |
4570101 |
T |
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| Q |
419 |
tttgttctttaattttcaacattttaaatttaattgtatggtttgtgttatgttgtgaggttatttttgcttaatgctacctgattgctttgctttgtct |
518 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4570102 |
tttgttctttgattttcaacat------tttaattgtatggtttgtgttatgttgtgaggttatttttgcttaatgctacctgattgctttgctttgtct |
4570195 |
T |
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