View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8741_low_7 (Length: 463)
Name: NF8741_low_7
Description: NF8741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8741_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 36023378 - 36022948
Alignment:
| Q |
18 |
tttgataattttgaaaggtgcattcctataagcccattcacacagtcacgctgcagctaggctgatatccctatcttctttatatggttaattatgttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36023378 |
tttgataattttgaaaggtgcattcctataagcccattgacacagtcacgctgcagctaggctgatatccctatcttctttatatggttaattatgttta |
36023279 |
T |
|
| Q |
118 |
gattctcttttagttaagactcatgcttgactatgaattaattttaatggtctctaaacaatgtgatgtttgtttcatgctacagaagcttggcaatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023278 |
gattctcttttagttaagactcatgcttgactatgaattaattttaatggtctctaaacaatgtgatgtttgtttcatgctacagaagcttggcaatttg |
36023179 |
T |
|
| Q |
218 |
aagagcattgacctttgttactctaaagaccttattgagatgccagatttatctagggccccaaaacttagtcttgtaagtcttgatttttgtgagagct |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023178 |
aagagcattgacctttgttactctaaagaccttatcgagatgccagatttatctagggccccaaaacttagtcttgtaagtcttgatttttgtgagagct |
36023079 |
T |
|
| Q |
318 |
tgagtaagctccatccatccattctcactgcccccaagcttgaagctctacttttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36023078 |
tgagtaagctccatccatccattctcactgcccccaagcttgaagctctacttttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttc |
36022979 |
T |
|
| Q |
418 |
caaatctctccgacgacttgatcttactgat |
448 |
Q |
| |
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|||||||||||||||||| |||||||||||| |
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| T |
36022978 |
caaatctctccgacgactcgatcttactgat |
36022948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 36002159 - 36002051
Alignment:
| Q |
174 |
aacaatgtgatgtttgtttcatgctacagaagcttggcaatttgaagagcattgacctttgttactctaaagaccttattgagatgccagatttatctag |
273 |
Q |
| |
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|||| |||||||||| ||| ||||||||||| || | |||||||| || ||||| ||| ||| || |||||||| ||||||| ||||| |||||||| |
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| T |
36002159 |
aacactgtgatgtttcttttatgctacagaaactagacaatttgatgaaaattgagcttgattattccaaagacctggttgagataccagacttatctag |
36002060 |
T |
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| Q |
274 |
ggccccaaa |
282 |
Q |
| |
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||| ||||| |
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| T |
36002059 |
ggcgccaaa |
36002051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 23453518 - 23453462
Alignment:
| Q |
370 |
tttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttccaaatctct |
426 |
Q |
| |
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|||| |||| |||||||| ||||||||||| |||||||||||| ||| |||||||| |
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| T |
23453518 |
tttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
23453462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 23478042 - 23477986
Alignment:
| Q |
370 |
tttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttccaaatctct |
426 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| |||||||||||| ||| |||||||| |
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|
| T |
23478042 |
tttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
23477986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 23498491 - 23498435
Alignment:
| Q |
370 |
tttaagaggatgcaaaaatattgaaagcctgaaaaccaacatttcttccaaatctct |
426 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| |||||||||||| ||| |||||||| |
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|
| T |
23498491 |
tttacgaggttgcaaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
23498435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 430
Target Start/End: Original strand, 12897351 - 12897607
Alignment:
| Q |
174 |
aacaatgtgatgtttgtttcatgctacagaagcttggcaatttgaagagcattgacctttgttactctaaagaccttattgagatgccagatttatctag |
273 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||| |||||||| || ||| ||| |||||| |||||| | |||||||| ||||| ||||||| |
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| T |
12897351 |
aacaatgtgatgtttcttttttcctacagaagcttgacaatttgatgattattatgcttgattactccaaagacttgattgagatcccagacttatctaa |
12897450 |
T |
|
| Q |
274 |
ggccccaaaacttagtcttgtaagtcttgatttttgtgagagcttgagtaagctccatccatccattctcactgcccccaagcttgaagctctactttta |
373 |
Q |
| |
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||| ||||||||| || ||| |||| || ||| ||||| | | | ||||||||||||||| |||||||||| |||||| || ||| |||| |
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| T |
12897451 |
ggcgccaaaacttgaactagtatctctttcttattgcgagagtctctgccaactccatccatccattttcactgccccgaagcttagagaactatattta |
12897550 |
T |
|
| Q |
374 |
agaggatgcaaaaatattgaaagcctgaaaaccaacatttcttccaaatctctccga |
430 |
Q |
| |
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| ||| |||||||| ||||||||||||||||| |||||| ||| |||||||||||| |
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| T |
12897551 |
aaaggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctctccga |
12897607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 16121297 - 16121241
Alignment:
| Q |
160 |
tttaatggtctctaaacaatgtgatgtttgtttcatgctacagaagcttggcaattt |
216 |
Q |
| |
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||||||| | ||| ||||||||||||||| |||| | ||||||||||||| |||||| |
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|
| T |
16121297 |
tttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaattt |
16121241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 16337867 - 16337923
Alignment:
| Q |
160 |
tttaatggtctctaaacaatgtgatgtttgtttcatgctacagaagcttggcaattt |
216 |
Q |
| |
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||||||| | ||| ||||||||||||||| |||| | ||||||||||||| |||||| |
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| T |
16337867 |
tttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaattt |
16337923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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