View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8742_high_10 (Length: 262)
Name: NF8742_high_10
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8742_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49394545 - 49394790
Alignment:
| Q |
1 |
atgaaattgagaatgcagataaaaagatagaatcatcaccttcatcagcaccgacggaagtccattccggcgacggatcagagtgcaactgcgacgaccc |
100 |
Q |
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| T |
49394545 |
atgaaattgagaatgcagataaaaagatagaatcatcaccttcatcagcaccgacggaagtccattccggcgacggatcagagtgcaactgcgacgaccc |
49394644 |
T |
|
| Q |
101 |
atcgttagctcggccgtacctttgttccattgtacggacgaaacgaagggtaaaaatggaacaatctgaaaaagtttggaaccctcaaaacagagaatgg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49394645 |
atcgttagctcggccgtaccttggttccattgtacggacgaaacgaagggtaaaaatggaacaatctgaaaaagtttggaaccctcaaaacagagaatgg |
49394744 |
T |
|
| Q |
201 |
atggttccgatgaaaagcgtgtgaatgaagaaactagagtgagaaa |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49394745 |
atggttccgatgaaaagcgtgtgaatgaagaaactagagtgagaaa |
49394790 |
T |
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