View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8742_high_4 (Length: 308)
Name: NF8742_high_4
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8742_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 20366468 - 20366736
Alignment:
| Q |
1 |
aacagctgaacaagaaccttttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttactttttcacttaaa |
100 |
Q |
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| T |
20366468 |
aacagctgaacaagaaccttttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttactttttcacttaaa |
20366567 |
T |
|
| Q |
101 |
aatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagacataaagacgagttgtgaaaaattaaagggcagc |
200 |
Q |
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| T |
20366568 |
aaaattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagacata---------------------aagggcagc |
20366646 |
T |
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| Q |
201 |
ccttgtgatggtgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaaa |
290 |
Q |
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| T |
20366647 |
ccttgtgatggcgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtaccttgtatgtcaaaaa |
20366736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 20373678 - 20373856
Alignment:
| Q |
21 |
ttctatttggttggtattaatagctagcacaagtctttacccaattaaatttctccatccctcttactttttcacttaaaaatattattgttgaaataaa |
120 |
Q |
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| T |
20373678 |
ttctatatggttggtattaatagctagcacaagtctttacccaattatttttctccatccctcttactttttcacttaaaaaaattattgttgaaataaa |
20373777 |
T |
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| Q |
121 |
attttcgtaggttaaatagtagaacataacatcttatgagtttagacataaagacgagttgtgaaaaattaaagggcag |
199 |
Q |
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| T |
20373778 |
aatttcgtaggttgaatagtagaacataacatcttatgagtttagacataaagacgagtggtgaaaaattaaagggcag |
20373856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 20373971 - 20374061
Alignment:
| Q |
200 |
cccttgtgatggtgaaagattgatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaaa |
290 |
Q |
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| T |
20373971 |
cccttatgatggtgaaagattaatgtggataatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaaa |
20374061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20366126 - 20366237
Alignment:
| Q |
64 |
attaaatttctccatccctcttactttttcacttaaaaatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagttt |
163 |
Q |
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||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||| |||| |||||| ||||||||||||||||| ||| |||||| |
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| T |
20366126 |
attaaatttctccattcctcttacttttccacttagaaa-attattgttgaaataaaaatttcataggttgaatagtagaacataacaacttgtgagttg |
20366224 |
T |
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| Q |
164 |
agacataaagacg |
176 |
Q |
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| T |
20366225 |
agatataaagacg |
20366237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 20386367 - 20386474
Alignment:
| Q |
68 |
aatttctccatccctcttactttttcacttaaaaatattattgttgaaataaaattttcgtaggttaaatagtagaacataacatcttatgagtttagac |
167 |
Q |
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||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| |||| ||| || |||||||||||||||||||||||||||| ||| |
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| T |
20386367 |
aatttctccattcctcttattttcccacttaaaaa-attattgttgaaataaaaatttcatagattgaatagtagaacataacatcttatgagttgagat |
20386465 |
T |
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| Q |
168 |
ataaagacg |
176 |
Q |
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||||||||| |
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| T |
20386466 |
ataaagacg |
20386474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 20386555 - 20386616
Alignment:
| Q |
229 |
taatattaatacatataagaggagattaattgtttatacaattgtacctcgtatgtcaaaaa |
290 |
Q |
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|||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
20386555 |
taatattaatacttattggagaagattaattgtttatataattgtacctcgtatgtcaaaaa |
20386616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 20366372 - 20366401
Alignment:
| Q |
261 |
tttatacaattgtacctcgtatgtcaaaaa |
290 |
Q |
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| T |
20366372 |
tttatacaattgtacctcgtatgtcaaaaa |
20366401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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