View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8742_high_5 (Length: 285)
Name: NF8742_high_5
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8742_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36604571 - 36604302
Alignment:
| Q |
1 |
gagcaaagcaaatcaagttttaatgaaaagagcatggacatccacacaaagcttatgaggaggtacaaacaggttcctgagtggtggtttgtgtgcatac |
100 |
Q |
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| T |
36604571 |
gagcaaagcaaatcaagttttaatgaaaagagcatggacatccacacaaagcttatgaggaggtacaaacaggttcctgagtggtggtttgtgtgcatac |
36604472 |
T |
|
| Q |
101 |
tcattgcaaccattggaactaccatttttgcatgtgaatattacaatgaacagctacaattaccttggtggggtgttctgttagcatgtggcattgctat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604471 |
tcattgcaaccattgcaactaccatttttgcatgtgaatattacaatgaacagctacaattaccttggtggggtgttctgttagcatgtggcattgctat |
36604372 |
T |
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| Q |
201 |
cttcttcactctccccattggtataataaccgcaatcacaaaccaggtttgtatatacatagatcaaaag |
270 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36604371 |
cttcttcaccctccccattggtataataaccgcaatcacaaaccaggttagtatatacatagatcaaaag |
36604302 |
T |
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