View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8742_high_9 (Length: 262)
Name: NF8742_high_9
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8742_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 49394437 - 49394323
Alignment:
| Q |
72 |
aatcgtatccacaacgacctgatgaagctgattgtatctattatttgaggacaggtttttgcggttatggttctaggtgtcggtttaaccatccacgtga |
171 |
Q |
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| T |
49394437 |
aatcgtatccacaacgacctgatgaagctgattgtatctattatttgaggacaggtttttgcggttatggttctaggtgtcggtttaaccatccacgtga |
49394338 |
T |
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| Q |
172 |
ccgaggcgcggtaaa |
186 |
Q |
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| T |
49394337 |
ccgtggcgcggtaaa |
49394323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49394508 - 49394464
Alignment:
| Q |
1 |
gtgtaatggaagtgattttgatgatgttgcgaatgttgcaggata |
45 |
Q |
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| T |
49394508 |
gtgtaatggaagtgattttgatgatgttgcgaatgttgcaggata |
49394464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 6500514 - 6500622
Alignment:
| Q |
77 |
tatccacaacgacctgatgaagctgattgtatctattatttgaggacaggtttttgcggttatggttctaggtgtcggtttaaccatccacgtgaccgag |
176 |
Q |
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| T |
6500514 |
tatccacaacgacctgatgaggttgattgtacttactatttgagaactggtttttgtggctttggttctaggtgtcggttcaatcatccccgtgaccgtg |
6500613 |
T |
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| Q |
177 |
gcgcggtaa |
185 |
Q |
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| T |
6500614 |
ccgcggtaa |
6500622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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