View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8742_low_14 (Length: 213)

Name: NF8742_low_14
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8742_low_14
NF8742_low_14
[»] chr1 (10 HSPs)
chr1 (16-195)||(8961933-8962112)
chr1 (20-195)||(8926584-8926759)
chr1 (20-195)||(8939010-8939185)
chr1 (58-165)||(9242869-9242976)
chr1 (95-165)||(9257837-9257907)
chr1 (58-165)||(9337209-9337316)
chr1 (58-165)||(9364068-9364175)
chr1 (95-165)||(9299802-9299872)
chr1 (95-165)||(9467063-9467133)
chr1 (56-165)||(8862130-8862239)
[»] scaffold0690 (1 HSPs)
scaffold0690 (68-165)||(1287-1384)
[»] chr6 (1 HSPs)
chr6 (68-147)||(15910740-15910819)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 8961933 - 8962112
Alignment:
Q  16 tattctggttgttttgtttggtgttttctttcgagtatacctctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8961933 tattctggttgttttgtttggtgttttctttcgagtatacctctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattat 8962032  T
Q  116 gaagcgtcaaagccaactagattttcttatgccgatatcaagagaattactgatcaattcaaggaaaagctgggtgaagg 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8962033 gaagcgtcaaagccaactagattttcttatgccgatatcaagagaattactgatcaattcaaggaaaagctgggcgaagg 8962112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 8926584 - 8926759
Alignment:
Q  20 ctggttgttttgtttggtgttttctttcgagtatacctctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaag 119  Q
    |||||||||||| ||||||||||  ||||||| ||  || ||| ||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  8926584 ctggttgttttgattggtgtttttattcgagtttatgtccattttaggacgaaaggggaagatcaaatgagacttgaaaactttttgaaggattatgaag 8926683  T
Q  120 cgtcaaagccaactagattttcttatgccgatatcaagagaattactgatcaattcaaggaaaagctgggtgaagg 195  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| || |||||    
T  8926684 cgtcaaagccaactagattttcttatgcagatatcaagagaattacggatcagttcaaagaaaagctaggcgaagg 8926759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 8939010 - 8939185
Alignment:
Q  20 ctggttgttttgtttggtgttttctttcgagtatacctctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaag 119  Q
    |||||||||||| ||||||||||| || |||| ||  || ||| ||||| |||||| ||| ||||||| |||||||||||||||||||||||||| ||||    
T  8939010 ctggttgttttgattggtgttttcatttgagtttatgtccattttaggacgaaaggggaaaatcaaacgagacttgaaaactttttgaaggattacgaag 8939109  T
Q  120 cgtcaaagccaactagattttcttatgccgatatcaagagaattactgatcaattcaaggaaaagctgggtgaagg 195  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |||||    
T  8939110 cgtcaaagccaacaagattttcttatgcagatatcaagagaattacagatcaattcaaagaaaagctaggggaagg 8939185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 9242976 - 9242869
Alignment:
Q  58 ctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaag 157  Q
    ||||| || ||||||| | |||||||| || ||| ||||||||||||||||||||||    || | |||||||||||| || |||||||| || || |||    
T  9242976 ctattttaagatgaaaagtgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacataaag 9242877  T
Q  158 agaattac 165  Q
    ||||||||    
T  9242876 agaattac 9242869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 9257907 - 9257837
Alignment:
Q  95 gaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaagagaattac 165  Q
    ||||||||||||||||||||| | || | ||||||||| ||||| || ||||| || ||||||||||||||    
T  9257907 gaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacatcaagagaattac 9257837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 9337209 - 9337316
Alignment:
Q  58 ctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaag 157  Q
    ||||| || ||||||| | |||||||| || ||| ||||||||||||||||||||||    || | |||||||||||| || |||||||| ||  | |||    
T  9337209 ctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagtgctttaaagccaactaggttctcttatgcagacttaaag 9337308  T
Q  158 agaattac 165  Q
    ||||||||    
T  9337309 agaattac 9337316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 9364068 - 9364175
Alignment:
Q  58 ctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaag 157  Q
    ||||| || ||||||| | |||||||| || ||| ||||||||||||||||||||||    || | |||||||||||| || |||||||| ||  | |||    
T  9364068 ctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttaaag 9364167  T
Q  158 agaattac 165  Q
    ||||||||    
T  9364168 agaattac 9364175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 9299802 - 9299872
Alignment:
Q  95 gaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaagagaattac 165  Q
    ||||||||||||||||||||| | || | ||||||||| ||||| || ||||| || || |||||||||||    
T  9299802 gaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacataaagagaattac 9299872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 9467133 - 9467063
Alignment:
Q  95 gaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaagagaattac 165  Q
    ||||||||||||||||||||| | || | ||||||||| ||||| || ||||| || || |||||||||||    
T  9467133 gaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacataaagagaattac 9467063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 8862239 - 8862130
Alignment:
Q  56 ctctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatca 155  Q
    ||||||| ||| | ||||| ||| ||||||| |||| |||| || |||||  ||||||||  |||   ||| || ||||||||||||||||||||||| |    
T  8862239 ctctattttagaaagaaagaagaggatcaaattagagttgataagtttttagaggattatcgagcacaaaaacctactagattttcttatgccgatataa 8862140  T
Q  156 agagaattac 165  Q
    | ||||||||    
T  8862139 aaagaattac 8862130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 1287 - 1384
Alignment:
Q  68 atgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgccgatatcaagagaattac 165  Q
    |||||||| |||||||| || ||| ||||||||||||||||||||||    || | |||||||||||| || |||||||| ||  | |||||||||||    
T  1287 atgaaaggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagaattac 1384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 15910819 - 15910740
Alignment:
Q  68 atgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaactagattttcttatgc 147  Q
    |||||||| |||||||| || ||| ||||||||||||||||||||||    || | |||||||||||| || ||||||||    
T  15910819 atgaaaggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgc 15910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University