View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8742_low_7 (Length: 284)

Name: NF8742_low_7
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8742_low_7
NF8742_low_7
[»] chr3 (19 HSPs)
chr3 (1-269)||(30131075-30131343)
chr3 (1-262)||(30135759-30136026)
chr3 (1-262)||(30141888-30142155)
chr3 (1-262)||(30145310-30145577)
chr3 (28-235)||(30049489-30049702)
chr3 (159-262)||(30132956-30133059)
chr3 (159-262)||(30134352-30134455)
chr3 (159-262)||(30143903-30144006)
chr3 (148-242)||(30157310-30157404)
chr3 (32-196)||(30072372-30072542)
chr3 (153-235)||(30459716-30459795)
chr3 (28-219)||(30068773-30068970)
chr3 (148-237)||(30173256-30173345)
chr3 (148-237)||(30086107-30086196)
chr3 (84-203)||(30055983-30056108)
chr3 (28-143)||(30462971-30463086)
chr3 (148-197)||(30079714-30079763)
chr3 (148-195)||(30171975-30172022)
chr3 (28-64)||(30173130-30173166)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 30131075 - 30131343
Alignment:
Q  1 ttatttaaagtagtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  30131075 ttatttaaagtagtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagtctttttcgaatttcaagctagaggccatcttgaat 30131174  T
Q  101 gcgtttactgcttcagagacagaggggaaacacaagccatattgaagattaggaaaacgagcacaataattgccactacccttttttgtgcattcagcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30131175 gcgtttactgcttcagagacagaggggaaacacaagccatattgaagattaggaaaacgagcacaataattgccactacccttttttgtgcattcagcat 30131274  T
Q  201 gagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacgaggatcataac 269  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30131275 gagaccaacataacttaggtggttcctcaaccttcttcttaagctctgcatatgaacgaggatcataac 30131343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30135759 - 30136026
Alignment:
Q  1 ttatttaaagtagtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  30135759 ttatttaaagttgtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagtctttttcgaatttcaagctagaggccatcttgaat 30135858  T
Q  101 gcgtttactgcttcagagacagaggggaaacacaagccatattgaag------attaggaaaacgagcacaataattgccactacccttttttgtgcatt 194  Q
    | ||||||||||||||||| |||||| ||||||||||||||||  ||      |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30135859 gtgtttactgcttcagagatagagggaaaacacaagccatatttgagattggaattaggaaaacgagcacaataattcccactacccttttctgtgcatt 30135958  T
Q  195 cagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacgagga 262  Q
    ||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||| |||||    
T  30135959 cagtatgagaccaacataacttaggttgttcctctaccttcttcttaagctctgcagatgaatgagga 30136026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30141888 - 30142155
Alignment:
Q  1 ttatttaaagtagtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  30141888 ttatttaaagttgtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagtctttttcgaatttcaagctagaggccatcttgaat 30141987  T
Q  101 gcgtttactgcttcagagacagaggggaaacacaagccatattgaag------attaggaaaacgagcacaataattgccactacccttttttgtgcatt 194  Q
    | ||||||||||||||||| |||||| ||||||||||||||||  ||      |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30141988 gtgtttactgcttcagagatagagggaaaacacaagccatatttgagattggaattaggaaaacgagcacaataattcccactacccttttctgtgcatt 30142087  T
Q  195 cagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacgagga 262  Q
    ||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||| |||||    
T  30142088 cagtatgagaccaacataacttaggttgttcctctaccttcttcttaagctctgcagatgaatgagga 30142155  T

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Target: chr3; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 30145310 - 30145577
Alignment:
Q  1 ttatttaaagtagtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaat 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  30145310 ttatttaaagttgtacataaatgcataatatcgatattaagcaggaagagacatcttcaagaagtctttttcgaatttcaagctagaggccatcttgaat 30145409  T
Q  101 gcgtttactgcttcagagacagaggggaaacacaagccatattgaag------attaggaaaacgagcacaataattgccactacccttttttgtgcatt 194  Q
    | ||||||||||||||||| |||||| ||||||||||||||||  ||      |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30145410 gtgtttactgcttcagagatagagggaaaacacaagccatatttgagattggaattaggaaaacgagcacaataattcccactacccttttctgtgcatt 30145509  T
Q  195 cagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacgagga 262  Q
    ||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||| |||||    
T  30145510 cagtatgagaccaacataacttaggttgttcctctaccttcttcttaagctctgcagatgaatgagga 30145577  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 30049489 - 30049702
Alignment:
Q  28 atatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaatgcgtttactgcttcagagacagagggg 127  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||| |||||| |  |||||||||||||||||      
T  30049489 atatcgatattaagcaggaagagacatcttcaagaagtctttcttgaatttcaagctagaggctatcttgtatgcgtcttgtgcttcagagacagaggca 30049588  T
Q  128 aaacacaagccatattgaagattag------gaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtg 221  Q
    |||||  |||||||||  |||||||      ||||  ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||||      
T  30049589 aaacagtagccatatttgagattagaatttggaaagtgagcacaataattcccactacccttttttgtgcattcatcatgagacatacataacttaggat 30049688  T
Q  222 cttcctcaaccttc 235  Q
     |||||||||||||    
T  30049689 gttcctcaaccttc 30049702  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 30132956 - 30133059
Alignment:
Q  159 gagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacg 258  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||    
T  30132956 gagcacaataattaccactacccttttatgtgcattcagcatgagaccaacataagttaggttgttcctcaaccttcttcttaagctctgcagatgaacg 30133055  T
Q  259 agga 262  Q
    ||||    
T  30133056 agga 30133059  T

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Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 30134352 - 30134455
Alignment:
Q  159 gagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacg 258  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||    
T  30134352 gagcacaataattaccactacccttttatgtgcattcagcatgagaccaacataagttaggttgttcctcaaccttcttcttaagctctgcagatgaacg 30134451  T
Q  259 agga 262  Q
    ||||    
T  30134452 agga 30134455  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 30143903 - 30144006
Alignment:
Q  159 gagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaagctctgcatatgaacg 258  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||||    
T  30143903 gagcacaataattaccactacccttttatgtgcattcagcatgagaccaacataagttaggttgttcctcaaccttcttcttaagctctgcagatgaacg 30144002  T
Q  259 agga 262  Q
    ||||    
T  30144003 agga 30144006  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 30157310 - 30157404
Alignment:
Q  148 attaggaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttcttcttaa 242  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||| ||||    
T  30157310 attaggaaagcgagcacaataattcccactacccttttttgtgcattcatcatgagaccaacataagttaggttgttcctcaaccttctttttaa 30157404  T

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Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 30072372 - 30072542
Alignment:
Q  32 cgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaatgcgtttactgcttcagagacagaggggaaac 131  Q
    ||||||||||| |||||||||||||||||||||        ||||||  |||||||||||||||||||||||| |  ||||| |||||||||||  ||||    
T  30072372 cgatattaagcgggaagagacatcttcaagaagtcattcttgaatttatagctagaggccatcttgaatgcgtcttgtgctttagagacagaggcaaaac 30072471  T
Q  132 acaagccatatt-ga----aga-ttaggaaaacgagcacaataattgccactacccttttttgtgcattca 196  Q
    | |||||||||| ||    ||| ||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  30072472 agaagccatatttgatatcagaattaggaaaatgagcacaataatttccactaccctttttggtgcattca 30072542  T

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Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 30459795 - 30459716
Alignment:
Q  153 gaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttc 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||    
T  30459795 gaaaacgagcacaataattcccactacccttttttgtgcattcatcatgagaccaacataacttagg---ttcctcaaccttc 30459716  T

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Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 30068773 - 30068970
Alignment:
Q  28 atatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaatgcgtttactgcttcagagacagagggg 127  Q
    |||||| ||||||||||||| ||||||||||||||||        ||||||    ||||||||||||||| |||||| |  |||||||||||||||||      
T  30068773 atatcggtattaagcaggaacagacatcttcaagaagtcattcttgaatttattactagaggccatcttgtatgcgtcttatgcttcagagacagaggca 30068872  T
Q  128 aaacacaagccatattgaagattag------gaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttagg 219  Q
    ||||| ||||||| ||  |||||||      ||||  ||||||||||||| |||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  30068873 aaacagaagccatgtttgagattagaatttggaaagtgagcacaataattcccactaccctttttcgtgcattcatcatgagacatacataacttagg 30068970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 30173256 - 30173345
Alignment:
Q  148 attaggaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttctt 237  Q
    |||||||| | ||||||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  30173256 attaggaagatgagcacaataattcccactaccctttcttatgcattcagcatgagaccaacataagttaggttgttcctcaaccttctt 30173345  T

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Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 30086107 - 30086196
Alignment:
Q  148 attaggaaaacgagcacaataattgccactacccttttttgtgcattcagcatgagaccaacataacttaggtgcttcctcaaccttctt 237  Q
    |||||||| | ||||||| ||||| |||||||||||| || ||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  30086107 attaggaagatgagcacagtaatttccactaccctttcttatgcattcagcatgagaccaacataagttaggtagttcctcaaccttctt 30086196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 30055983 - 30056108
Alignment:
Q  84 tagaggccatcttgaatgcgtttactgcttcagagacagaggggaaacacaagccata-ttga----ag-attaggaaaacgagcacaataattgccact 177  Q
    ||||||| ||||||||||||||| |||||||||||| |||||  |||||| ||||||| ||||    || ||||| ||||||||||||| |||| |||||    
T  30055983 tagaggctatcttgaatgcgttttctgcttcagagatagaggcaaaacaccagccatatttgatatcagaattagcaaaacgagcacaaaaattcccact 30056082  T
Q  178 acccttttttgtgcattcagcatgag 203  Q
    |||||| ||||||||||||| |||||    
T  30056083 acccttctttgtgcattcagtatgag 30056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 30463086 - 30462971
Alignment:
Q  28 atatcgatattaagcaggaagagacatcttcaagaagnnnnnnncgaatttcaagctagaggccatcttgaatgcgtttactgcttcagagacagagggg 127  Q
    ||||| ||||||||| |||||||||||||||||||||        ||| ||  || |||||||||||||| |||||| |  |||||||||||||||||      
T  30463086 atatcaatattaagcgggaagagacatcttcaagaagtctttcttgaacttataggtagaggccatcttgtatgcgtcttgtgcttcagagacagaggca 30462987  T
Q  128 aaacacaagccatatt 143  Q
    ||||| ||||||||||    
T  30462986 aaacagaagccatatt 30462971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 30079714 - 30079763
Alignment:
Q  148 attaggaaaacgagcacaataattgccactacccttttttgtgcattcag 197  Q
    ||||||||||||||||||| |||| |||||||| || |||||||||||||    
T  30079714 attaggaaaacgagcacaaaaattcccactacctttctttgtgcattcag 30079763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 30171975 - 30172022
Alignment:
Q  148 attaggaaaacgagcacaataattgccactacccttttttgtgcattc 195  Q
    |||||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  30171975 attaggaaaacgaggacaataattcccactacacttctttgtgcattc 30172022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 30173130 - 30173166
Alignment:
Q  28 atatcgatattaagcaggaagagacatcttcaagaag 64  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  30173130 atattgatattaagcaggaacagacatcttcaagaag 30173166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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