View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8742_low_8 (Length: 277)

Name: NF8742_low_8
Description: NF8742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8742_low_8
NF8742_low_8
[»] chr3 (11 HSPs)
chr3 (16-270)||(32954158-32954412)
chr3 (108-182)||(11314384-11314458)
chr3 (108-182)||(54375390-54375464)
chr3 (108-168)||(2990983-2991043)
chr3 (113-183)||(34245220-34245290)
chr3 (115-184)||(54084296-54084365)
chr3 (115-182)||(36060251-36060318)
chr3 (113-182)||(33123484-33123553)
chr3 (113-182)||(8936760-8936833)
chr3 (108-192)||(49943053-49943137)
chr3 (108-164)||(53855745-53855801)
[»] chr5 (7 HSPs)
chr5 (108-173)||(7430113-7430178)
chr5 (113-184)||(43283420-43283491)
chr5 (113-182)||(16033019-16033088)
chr5 (119-180)||(34114355-34114416)
chr5 (113-179)||(35179234-35179300)
chr5 (108-140)||(631492-631524)
chr5 (103-179)||(41894406-41894482)
[»] chr4 (4 HSPs)
chr4 (113-182)||(4145259-4145328)
chr4 (115-184)||(26275548-26275617)
chr4 (108-179)||(4762552-4762623)
chr4 (108-140)||(34581607-34581639)
[»] chr8 (6 HSPs)
chr8 (108-191)||(21226902-21226985)
chr8 (116-181)||(8455122-8455187)
chr8 (108-173)||(8464007-8464072)
chr8 (108-172)||(45371099-45371163)
chr8 (113-184)||(34862895-34862966)
chr8 (108-182)||(16950241-16950315)
[»] chr1 (9 HSPs)
chr1 (108-186)||(1118890-1118968)
chr1 (120-203)||(8344542-8344625)
chr1 (108-178)||(6025971-6026041)
chr1 (113-182)||(7747263-7747331)
chr1 (108-181)||(15190855-15190928)
chr1 (113-182)||(43391540-43391609)
chr1 (108-184)||(9694394-9694470)
chr1 (115-175)||(17484646-17484706)
chr1 (108-184)||(47847991-47848066)
[»] chr7 (7 HSPs)
chr7 (113-174)||(5257555-5257616)
chr7 (113-182)||(6894317-6894386)
chr7 (113-157)||(19130231-19130275)
chr7 (113-177)||(28613250-28613314)
chr7 (115-182)||(31773506-31773573)
chr7 (113-174)||(18749263-18749324)
chr7 (108-184)||(24942479-24942555)
[»] chr6 (3 HSPs)
chr6 (113-195)||(33532497-33532579)
chr6 (108-140)||(9163784-9163816)
chr6 (108-184)||(34881697-34881773)
[»] chr2 (2 HSPs)
chr2 (107-147)||(33623674-33623714)
chr2 (108-140)||(36300410-36300442)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 32954412 - 32954158
Alignment:
Q  16 atatgatcctcttagcatttgtcagctcnnnnnnntgatgttttattgttaaaactctgctatgaaagaaggctatcgcgccattattgcttctatatga 115  Q
    |||||||||||||||||||||||||| |       |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  32954412 atatgatcctcttagcatttgtcagcccaaaaaaatgatgttttattgttaaaactccgctatgaaagaaggctatcgcgccattatagcttctatatga 32954313  T
Q  116 caacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagcgccggtatttaatagcactgattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32954312 caacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagcgccggtatttaatagcactgattt 32954213  T
Q  216 agtgcattgcttatgctgtatgtgttgttcaactgtaaatggttggtatgtttat 270  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32954212 agtgcattgcatatgctgtatgtgttgttcaactgtaaatggttggtatgtttat 32954158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 11314458 - 11314384
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||| | |||||||||||||||||||||| ||| || ||||||||| ||||||||| ||| |||||||    
T  11314458 ctatatgacaatactttgtactaaatagcgtattgtagaacaatagcaatttgcccaaattcctctaggctatag 11314384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 54375464 - 54375390
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    |||| ||| |||||||||||||||||||| ||||| |||| || |||| ||||||||||| ||||||||||||||    
T  54375464 ctatttgataacattttgtactaaatagcttattggggaacaatagcagtttgtccaaataccgctatgctatag 54375390  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 2990983 - 2991043
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaatt 168  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||    
T  2990983 ctatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 34245220 - 34245290
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagt 183  Q
    ||||||||||||||| |||| | ||||| |  ||||||||||||||||||||| || || |||||||||||    
T  34245220 tgacaacattttgtattaaacaacgtatcgcagaataaaagcaatttgtccaagtttcgttatgctatagt 34245290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 54084365 - 54084296
Alignment:
Q  115 acaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| |||||| ||||||||||||||||||||| |  | || ||||| ||||||||||||||| ||||||    
T  54084365 acaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatagtg 54084296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 36060318 - 36060251
Alignment:
Q  115 acaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    |||| ||||||||||||||| |||||||||||| ||| || |||||| ||||||| || |||| ||||    
T  36060318 acaatattttgtactaaataacgtattgtggaacaaatgcgatttgttcaaattctgcaatgcaatag 36060251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 33123484 - 33123553
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||| |||||||||| | ||||| |||| ||||| || |||  |||||| |||||||||||||||||||    
T  33123484 tgacagcattttgtaccacatagcatattatggaacaatagcggtttgtctaaattccgctatgctatag 33123553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 8936760 - 8936833
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataa----aagcaatttgtccaaattccgctatgctatag 182  Q
    |||||||| ||||| ||||||| ||| |||||||||||     |||||||||| |||||||||||| |||||||    
T  8936760 tgacaacactttgttctaaataacgttttgtggaataataggtagcaatttgttcaaattccgctaagctatag 8936833  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 49943053 - 49943137
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagcg 192  Q
    |||| |||||||||||||||| ||||  |||||||||||| || | |  ||| ||||||||| |||||||| ||| ||| |||||    
T  49943053 ctatttgacaacattttgtacgaaatcacgtattgtggaacaataacggtttttccaaattctgctatgctctagcggtatagcg 49943137  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 53855745 - 53855801
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtcca 164  Q
    |||| |||||||||||||||||||||||| |||||  ||| || |||| ||||||||    
T  53855745 ctatttgacaacattttgtactaaatagcatattgcagaacaatagcagtttgtcca 53855801  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 7430178 - 7430113
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgct 173  Q
    |||| ||||||||| ||||||||||||||||||||||||| || |||  |||||||||||||||||    
T  7430178 ctatttgacaacatcttgtactaaatagcgtattgtggaacaatagcggtttgtccaaattccgct 7430113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 43283420 - 43283491
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||||||||||||| | ||||||||||||| |||| || ||| |||||| |||||| |||||||||||||||    
T  43283420 tgacaacattttgtcccaaatagcgtattgcggaacaacagcgatttgttcaaattacgctatgctatagtg 43283491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 16033088 - 16033019
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||||||||||| |||||||||| | || |||||  |||||| ||||||||| || |||||||    
T  16033088 tgacaacattttgtactaagtagcgtattgcgtaacaaaagagatttgttcaaattccgatacgctatag 16033019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 34114416 - 34114355
Alignment:
Q  119 cattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctat 180  Q
    ||||||||||||||||||||||||||||| || ||| |||||| ||| ||| ||||| ||||    
T  34114416 cattttgtactaaatagcgtattgtggaacaatagcgatttgttcaagttctgctatcctat 34114355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 35179234 - 35179300
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgcta 179  Q
    |||||||||||  ||||||||||||| ||| |||| || |||| |||||| |||||| |||||||||    
T  35179234 tgacaacatttcatactaaatagcgtgttgcggaacaatagcagtttgtctaaattcagctatgcta 35179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 631492 - 631524
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtat 140  Q
    ||||||||||| |||||||||||||||||||||    
T  631492 ctatatgacaatattttgtactaaatagcgtat 631524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 41894482 - 41894406
Alignment:
Q  103 tgcttctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgcta 179  Q
    |||| |||| |||||||| |||||| ||||||||||||||  ||| || | |||||||| ||||||| |||| ||||    
T  41894482 tgctgctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattctgctaggcta 41894406  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 4145259 - 4145328
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||||||||| |||||||||| |||||| || | |||||||| ||||||| ||||||||||||    
T  4145259 tgacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattctgctatgctatag 4145328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 26275548 - 26275617
Alignment:
Q  115 acaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| |||||||||||||||||||||| ||||| || ||| |||||| ||||| ||||||||| ||||||    
T  26275548 acaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgctatgcaatagtg 26275617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 4762552 - 4762623
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgcta 179  Q
    |||| |||||||||||||||||||||||||||||| |||  || | |  ||||||||||| |||||| ||||    
T  4762552 ctatttgacaacattttgtactaaatagcgtattgcggagcaataacggtttgtccaaatgccgctacgcta 4762623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 34581639 - 34581607
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtat 140  Q
    |||| ||||||||||||||||||||||||||||    
T  34581639 ctatttgacaacattttgtactaaatagcgtat 34581607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 21226985 - 21226902
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagc 191  Q
    |||| ||||||||||||||||| |||||||||| | |||| || |||  ||||| |||||||||||||||||||| ||| ||||    
T  21226985 ctatttgacaacattttgtactgaatagcgtatggaggaacaatagctttttgttcaaattccgctatgctatagcggtatagc 21226902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 8455187 - 8455122
Alignment:
Q  116 caacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctata 181  Q
    |||||||||||||||||||| ||| |||||||||| |||  ||| |||||||||| ||| ||||||    
T  8455187 caacattttgtactaaatagtgtactgtggaataatagctgtttttccaaattccactacgctata 8455122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 8464072 - 8464007
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgct 173  Q
    ||||||||||||||||||||||||| |||| ||||||||| || ||||  || |||||||| ||||    
T  8464072 ctatatgacaacattttgtactaaacagcggattgtggaacaatagcagcttttccaaattacgct 8464007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 45371099 - 45371163
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgc 172  Q
    |||| |||||||||||||||||||||||| ||||| |||| || ||   ||||||||||||||||    
T  45371099 ctatttgacaacattttgtactaaatagcatattgcggaacaatagtggtttgtccaaattccgc 45371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 34862966 - 34862895
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||||||||||||||||| ||||||||| |||||  || |||  |||||||||| || |||| |||||||||    
T  34862966 tgacaacattttgtactatatagcgtatcgtggagcaatagcggtttgtccaaactctgctacgctatagtg 34862895  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 16950315 - 16950241
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    |||| ||||||||||||||||||||||  |||| |||||| |||   ||||||| ||||||| |||| |||||||    
T  16950315 ctatttgacaacattttgtactaaataatgtatcgtggaacaaagataatttgttcaaattctgctacgctatag 16950241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 1118968 - 1118890
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggt 186  Q
    |||| |||||||| |||||||||||||| ||||||| ||| || ||||||| || ||||||||| |||| |||||||||    
T  1118968 ctatttgacaacactttgtactaaatagagtattgtagaaaaatagcaattagttcaaattccgttatgatatagtggt 1118890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 8344625 - 8344542
Alignment:
Q  120 attttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagcgccggtatttaa 203  Q
    ||||||||||||||||| |||||||||| || ||   ||||| ||||||| |||||||||||| | | ||| |||| |||||||    
T  8344625 attttgtactaaatagcttattgtggaaaaatagtggtttgttcaaattctgctatgctatagggctatagtgccgctatttaa 8344542  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 6025971 - 6026041
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgct 178  Q
    |||| |||||||||||||||||||||||| ||| | |||| || | | |||||| |||||||| |||||||    
T  6025971 ctatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcccctatgct 6026041  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 7747263 - 7747331
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    |||||| ||||| ||||||||||||||||||||||||  |  |||||||  |||||||||||||| ||||    
T  7747263 tgacaatattttatactaaatagcgtattgtggaatatga-aaatttgtttaaattccgctatgccatag 7747331  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 15190928 - 15190855
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctata 181  Q
    |||| ||||||||||||||||| ||||| |||| || ||| || |||||||| |  ||||||||||| ||||||    
T  15190928 ctatttgacaacattttgtactgaatagtgtatcgtagaacaatagcaatttctttaaattccgctaggctata 15190855  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 43391540 - 43391609
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||||||||||||||| | || | |||| || ||| |||||| ||||||| || |||||||||    
T  43391540 tgacaacattttgtactaaatagtgcatcggggaacaatagcgatttgttcaaattctgccatgctatag 43391609  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 9694470 - 9694394
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| |||| ||||||||| |||||||| ||||||||||| || ||| ||| |  ||||||  ||||||||||||||    
T  9694470 ctatttgaccacattttgttctaaatagtgtattgtggaacaatagcgattagctcaaattttgctatgctatagtg 9694394  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 17484646 - 17484706
Alignment:
Q  115 acaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctat 175  Q
    |||| |||| |||||| |||| |||| |||||||||||||| || || |||||||||||||    
T  17484646 acaatatttggtactagatagtgtatcgtggaataaaagcagttcgttcaaattccgctat 17484706  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 47847991 - 47848066
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| |||||||||||||||| |||| || ||| |||||| || ||| |||||| ||||||||||| |||| |||||    
T  47847991 ctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaattccgctttgctgtagtg 47848066  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 5257616 - 5257555
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgcta 174  Q
    |||||||||||||||||| |||||||||||||||| |  | | |||||||||||||| ||||    
T  5257616 tgacaacattttgtactatatagcgtattgtggaacattaacgatttgtccaaattctgcta 5257555  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 6894317 - 6894386
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||||||||| ||||| |||||||  || || |||||||||| |||||||| ||| |||||||    
T  6894317 tgacaacattttgtacttaatagtgtattgttaaacaatagcaatttgttcaaattccactacgctatag 6894386  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 19130231 - 19130275
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaat 157  Q
    |||||||| |||||||||||||||||||||||||| || ||||||    
T  19130231 tgacaacactttgtactaaatagcgtattgtggaacaatagcaat 19130275  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 28613250 - 28613314
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgc 177  Q
    |||||||||||||||||| |||| |||| |||||| || |||  ||||||||||||| |||||||    
T  28613250 tgacaacattttgtactatatagtgtatcgtggaacaatagccgtttgtccaaattctgctatgc 28613314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 31773573 - 31773506
Alignment:
Q  115 acaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatag 182  Q
    ||||||||||| |||||||||||||| |||||| || ||   |||||| ||||||||||| |||||||    
T  31773573 acaacattttgaactaaatagcgtatcgtggaacaatagtggtttgtctaaattccgctacgctatag 31773506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 18749263 - 18749324
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgcta 174  Q
    |||||||||| ||||||||||| ||||| | |||| || |||| ||||||||||||| ||||    
T  18749263 tgacaacattctgtactaaatatcgtatagcggaacaatagcattttgtccaaattctgcta 18749324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 24942555 - 24942479
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| ||||||||||||||||||| ||||||||  ||||| || ||| || ||| || |||| | ||||||||||||    
T  24942555 ctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatattctgttatgctatagtg 24942479  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 33532497 - 33532579
Alignment:
Q  113 tgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtggtgtagcgccg 195  Q
    |||||||||| ||||||||||||||||| ||| || ||  || |||||| ||||||| | || ||||||||| | ||||||||    
T  33532497 tgacaacattctgtactaaatagcgtatagtgtaacaatggcgatttgttcaaattctgttacgctatagtgctatagcgccg 33532579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 9163816 - 9163784
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtat 140  Q
    |||| ||||||||||||||||||||||||||||    
T  9163816 ctatttgacaacattttgtactaaatagcgtat 9163784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 34881773 - 34881697
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtattgtggaataaaagcaatttgtccaaattccgctatgctatagtg 184  Q
    |||| |||||| | ||||||||||||||||||| ||||||  | ||  |||||| || ||||||||||| |||||||    
T  34881773 ctatttgacaagactttgtactaaatagcgtatcgtggaacgatagtgatttgttcatattccgctatgttatagtg 34881697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 33623674 - 33623714
Alignment:
Q  107 tctatatgacaacattttgtactaaatagcgtattgtggaa 147  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  33623674 tctatatgacaacactttgtactaaatagcatatagtggaa 33623714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 36300442 - 36300410
Alignment:
Q  108 ctatatgacaacattttgtactaaatagcgtat 140  Q
    |||| ||||||||||||||||||||||||||||    
T  36300442 ctatttgacaacattttgtactaaatagcgtat 36300410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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