View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8743_high_2 (Length: 633)

Name: NF8743_high_2
Description: NF8743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8743_high_2
NF8743_high_2
[»] chr4 (3 HSPs)
chr4 (188-617)||(24543623-24544053)
chr4 (1-140)||(24543399-24543540)
chr4 (120-174)||(24543541-24543595)
[»] chr5 (1 HSPs)
chr5 (507-562)||(14674231-14674285)
[»] chr7 (1 HSPs)
chr7 (505-562)||(18215229-18215285)
[»] chr8 (2 HSPs)
chr8 (123-175)||(39421574-39421626)
chr8 (507-562)||(22595950-22596010)
[»] chr2 (1 HSPs)
chr2 (506-562)||(37558938-37558993)
[»] chr1 (1 HSPs)
chr1 (508-562)||(46348426-46348479)
[»] chr6 (2 HSPs)
chr6 (126-154)||(3859408-3859436)
chr6 (506-562)||(17841632-17841687)
[»] chr3 (1 HSPs)
chr3 (507-562)||(40052295-40052348)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 188 - 617
Target Start/End: Original strand, 24543623 - 24544053
Alignment:
Q  188 tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagataaagaggcagaggaaga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  24543623 tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagaggaagaggaagaggaaga 24543722  T
Q  288 ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543723 ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt 24543822  T
Q  388 ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattg 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543823 ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattg 24543922  T
Q  488 attttcacttatactattcctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataatttnnnnnnnntcacttaatgcattgta 587  Q
    ||||||||||||||||||||||||||||| |||| | ||||||  |||||||||| |||||||| ||||||||||         ||||||||||||||||    
T  24543923 attttcacttatactattcctatgaagcatggatacggacaccagacactgacacgccgacacaactaataatttaaaaaaatacacttaatgcattgta 24544022  T
Q  588 attacaagtgtcggt-cgtgtccgatacatg 617  Q
    ||||||||||||||| ||||||||| |||||    
T  24544023 attacaagtgtcggtgcgtgtccgacacatg 24544053  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24543399 - 24543540
Alignment:
Q  1 taaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactc--atgtattgattttttatgcatctaactccttttaagtgaataactcact 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543399 taaatgaaaaacccaaacaccatattcgatgggaaggtacattgtactctcatgtattgattttttatgcatctaactccttttaagtgaataactcact 24543498  T
Q  99 ttaattatagttcaaagtaaatattatcaaccattgattaac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24543499 ttaattatagttcaaagtaaatattatcaaccattgattaac 24543540  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 24543541 - 24543595
Alignment:
Q  120 tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543541 tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac 24543595  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 14674231 - 14674285
Alignment:
Q  507 ctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    ||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  14674231 ctatgaagcacggatacagacacgga-cactgacacgccgacacagctaataattt 14674285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 18215285 - 18215229
Alignment:
Q  505 tcctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    |||||||||||||||||||||||| || ||||| |||| ||||| |||||||||||||    
T  18215285 tcctatgaagcacggatgcagaca-cggacactaacacgccgacgcagctaataattt 18215229  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 39421626 - 39421574
Alignment:
Q  123 tatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataaca 175  Q
    ||||||||||||||||||||||||||| |||| |||||| || || |||||||    
T  39421626 tatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataaca 39421574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 22595950 - 22596010
Alignment:
Q  507 ctatgaagcacggatgcagacaccg-----aacactgacactccgacacagctaataattt 562  Q
    ||||||||||||||| | |||||||     ||||||||||| |||||||||||||||||||    
T  22595950 ctatgaagcacggatacggacaccggacacaacactgacacgccgacacagctaataattt 22596010  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 562
Target Start/End: Original strand, 37558938 - 37558993
Alignment:
Q  506 cctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    |||||||||||||||| | ||||| || ||||||||| |||||||||||||||||||    
T  37558938 cctatgaagcacggatacggacacgga-cactgacacgccgacacagctaataattt 37558993  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 46348479 - 46348426
Alignment:
Q  508 tatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    |||||||||||||| | ||||| || ||||||||| |||||||||||||||||||    
T  46348479 tatgaagcacggatacggacacgga-cactgacacgccgacacagctaataattt 46348426  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 3859436 - 3859408
Alignment:
Q  126 caaccattgattaacaaatcaaagttaga 154  Q
    |||||||||||||||||||||||||||||    
T  3859436 caaccattgattaacaaatcaaagttaga 3859408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 562
Target Start/End: Complemental strand, 17841687 - 17841632
Alignment:
Q  506 cctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    |||||||||||| ||| | ||||| || ||||||||| |||||||||||||||||||    
T  17841687 cctatgaagcactgatacggacacgga-cactgacacgccgacacagctaataattt 17841632  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 40052295 - 40052348
Alignment:
Q  507 ctatgaagcacggatgcagacaccgaacactgacactccgacacagctaataattt 562  Q
    ||||||||||||||| | |||||   |||||||||| |||||||||||||||||||    
T  40052295 ctatgaagcacggatacggacacg--acactgacacgccgacacagctaataattt 40052348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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